Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1656 ATGCAGGAAATACACTCCATGGGCGGAGCGAGGTTTTTCTCCGGCGGAGGTGGCGGCGTTGGCGACCGGAGGCTCCGACCCCACCACCAGAACCAGCAAGCCCTGAAGTGCCCCCGCTGCGACTCCCTCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCCCAGCCCCGCCACTTCTGCAAGAACTGCCGCCGCTACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCCGTCGGCGGCGGCTGCCGCAAATCCAAACGCTCCTCCACCAAACCCAACAAAACAACATCCTCCGAAACCGCCACGCCGCCTCCACCACCGGACAACAACAACAACAACAACTCGAGCTCACACTCCAGCAGCGAGAGCTCCAGCCTTGCGGAGGCCGTGTCGGCGCCGTCGGCTCCATCGAATTTAAACTCCGATTCCAACAACAACAACATGCAACAGCAGCAAGAGTCAAAGTTGTTGATCCCTGCTGCGGAAACAAACCCTGTTTTGGAAGCAAATCCACTGGAGCAAGGAACAGGGGACTGCGGTGGAATCTTCTCTGAAATCGGGGCTTTCACCAGTTTGATCACTACTAATACTACTACTACTTCCACTAACGAGCCATTGGCGTTCGGTTTCGGTAATTCCAGCACTCTCCCCGACGCGTCGTTTCCGTGGCAGCACCAGAAGGAGAGTTCCTTGCTCGATCACACCGTTGATTTGTCGGGGATGTATAGTAAAACCAGCCACGGAGGAGGATTCGGATCCTTGGATTGGCACAGCGCTACTGCGGATCAAGGTTTGTTTGATCTTCCCAACACCGTTGATCACGCTTACTGGAATCACACTCACTGGTCTGACCACGACAATTCTACTCTCTTTCATCTTCCCTGA 891 0.5533 MQEIHSMGGARFFSGGGGGVGDRRLRPHHQNQQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSSTKPNKTTSSETATPPPPPDNNNNNNSSSHSSSESSSLAEAVSAPSAPSNLNSDSNNNNMQQQQESKLLIPAAETNPVLEANPLEQGTGDCGGIFSEIGAFTSLITTNTTTTSTNEPLAFGFGNSSTLPDASFPWQHQKESSLLDHTVDLSGMYSKTSHGGGFGSLDWHSATADQGLFDLPNTVDHAYWNHTHWSDHDNSTLFHLP 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1656 296 MobiDBLite consensus disorder prediction 1 25 - -
Aed6g1656 296 MobiDBLite consensus disorder prediction 113 154 - -
Aed6g1656 296 ProSiteProfiles Zinc finger Dof-type profile. 35 89 IPR003851 GO:0003677|GO:0006355
Aed6g1656 296 ProSitePatterns Zinc finger Dof-type signature. 37 73 IPR003851 GO:0003677|GO:0006355
Aed6g1656 296 Pfam Dof domain, zinc finger 33 89 IPR003851 GO:0003677|GO:0006355
Aed6g1656 296 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 283 IPR045174 GO:0003700|GO:0006355
Aed6g1656 296 MobiDBLite consensus disorder prediction 79 154 - -
Aed6g1656 296 PANTHER DOF ZINC FINGER PROTEIN 4 16 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1656 Aed-Chr6 20390545 20391435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1656 22 296 C2C2-Dof Transcription Factor Family AT5G60850 42.215 8.63e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aed6g1656 zf-Dof 2.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1656 - - gmx:778097 365.155