Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1456 ATGACAATAGAGGTAGTAAAAAGGGCATGGAGAGGGAGAGGCGCGTGTGGGAAATGGGAATATATCCCTTGCTTGTGGGAGGAGGGAGAGCACTGTCACTTCCCAACTAACACTCACACTCTTCACAGCACTGCTGTCACAACTTCCACTAACAAACTAAACTTGTTCATCAGAACAACAAGAGGAGAGCTCAATAGGAACGTTCCCATCACCTGCTTCTTCATGGGTTTTTCCTCTCTCCACGTCTGCATGGATTCATCAGATCACTGGATGCAGGGCACAATTCACGAGGAGTGTGGTGGGGTGGATTCTTCTTCATCACCATGCTCGAGGCCAATGACAACAGAGAGGAGGCTAAGTCGACCACCTCAAGAGCAAGCCCTGAAGTGCCCTAGGTGTGAATCAACACACACCAAGTTCTGTTACTACAACAACTACAGCCTCACCCAGCCCAGGTACTTCTGCAAGACATGTAGAAGGTACTGGACCAAAGGTGGCACTCTTAGGAACATCCCTGTTGGTGGTGGCTGCAGAAAGAACAAGAAAGTTTCTACTAAGAAACAACACAACGTCGAAAACCACCTGCACCAACCACCACCTATTAATCAAAACCCTGGACCCACCTCTTATCTCCATAATCATCACAAAGATCTTCAACTTCCCTTCCTGCAGGATGTACAATTTTCCCACCTCAACAACTTGCTTGGGAGTACTAATGCTGTGGCAATGCAGGGAAACCCTAGTTTTATGGAGAGTAGGTATACCAACATGGGCATGCTTGATCAGAACCCTAGGCCAATTGACTTCATGGAAAGCATGAATATGATTAGGGGTTCCACTAGGAGTTTTGATCAGCTTCTTGAACACAGTGATGATATGAGTGTGGCTGCTGCTGGTGCTGTTGGGTTTGGTGGTGATGTGAGTGGATACAATATCAATGGATTGCCATTGAATTATCAAGGTCTTACCTCTTCAGCATTTGGGGGCATGTCTCTAGATGGATCAGGAGGCATTAGCAACGTTGGAACTTATATAATGGACTCTTGCCAGAGACTTATGTTGCCCTATGATGGAGGTGACATTAACAGTACTCTCAATGGTTCAATTGATGTGAAGCCAAACCCTAAGCTGTTGTCTCTTGAATGGCAAGATCAGGGTTGCTCTAATGGTTCAGGATCATGGACCGGCTGCTATGGATCTTCCACAACAAACCCTTTGGTCTAG 1224 0.4641 MTIEVVKRAWRGRGACGKWEYIPCLWEEGEHCHFPTNTHTLHSTAVTTSTNKLNLFIRTTRGELNRNVPITCFFMGFSSLHVCMDSSDHWMQGTIHEECGGVDSSSSPCSRPMTTERRLSRPPQEQALKCPRCESTHTKFCYYNNYSLTQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSTKKQHNVENHLHQPPPINQNPGPTSYLHNHHKDLQLPFLQDVQFSHLNNLLGSTNAVAMQGNPSFMESRYTNMGMLDQNPRPIDFMESMNMIRGSTRSFDQLLEHSDDMSVAAAGAVGFGGDVSGYNINGLPLNYQGLTSSAFGGMSLDGSGGISNVGTYIMDSCQRLMLPYDGGDINSTLNGSIDVKPNPKLLSLEWQDQGCSNGSGSWTGCYGSSTTNPLV 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1456 407 PANTHER DOF ZINC FINGER PROTEIN DOF5.6-LIKE 104 389 - -
Aed6g1456 407 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 104 389 IPR045174 GO:0003700|GO:0006355
Aed6g1456 407 ProSitePatterns Zinc finger Dof-type signature. 130 166 IPR003851 GO:0003677|GO:0006355
Aed6g1456 407 ProSiteProfiles Zinc finger Dof-type profile. 128 182 IPR003851 GO:0003677|GO:0006355
Aed6g1456 407 Pfam Dof domain, zinc finger 126 182 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1456 Aed-Chr6 18872913 18875707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1456 75 387 C2C2-Dof Transcription Factor Family AT5G62940 40.407 5.56e-52 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aed6g1456 zf-Dof 7.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1456 - - gmx:100815061 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1456 6 18872913 18875707 Aed10g0939 10 7970919 7973191 PCT