Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0642 ATGGTTTTCACTGCCAATGAATTACAAGAATGGAAAGATTTTCCCAAAGGACTCAAGGTTCTTCTCCTTGAGGGAGACAACATTTCTGCTGCAGAGATAAGGGCAAAGCTTGAAGCCATGGACTATAATGTTTCTACATTCTGTGATGAGAATGAAGCCTTGTTAGCGATCTCAAGTGGACTCGAAAGCTTCCACATTGCCATAGTGGAGGTGAGTTCAAGTAGTGGCCAGGGAGGTTTCAAATTTCTTGAGAATGCCAAGGACTTGCCAACCATTATGGCTTCAAACAATCACTGCCTGAACACCATGATGAAGTGCATAGCTCTTGGTGCAGTTGAGTTCCTCAGCAAACCACTCTCTGAGGACAAGCTCAGAAATATCTGGCAGCATGTGGTTCACAAGCAGGCATTCAATGCTGGGGCAAGCATCCTGTCTGAATCACTTAAACCTGTCAAAGAATCTGTAGCGTCCATGTTGCAGCTCCAAACAGACAATGAACAACATGAAAGTAGAGTGACCATTGATATAGAGAAAGTATCCAGCTTTGTTGATAATGATCATGAGCTGTCTCCTGGAAATGATAAATATCCAGCTCCTTCAACCCCACAATTGAGACAAGGGACAAGATTGTTGGACGATGGCGATTGTCAAGAGCAGACTAATTGCTCTACAGAAAAAGAAAGTGGGGAACATGATGGGGAATCTAAATCTGTCGAAACTACATGTGGAAATTTGAATGTTGAAAGTACTCCTCAACAAAGGAAATCTGAAATTACTTTGGTTAGGGAGGAAGTTGAAAGTACTCCTCGACCAGGGAAATCTGAAATTACTTTTGTTAGGGAGGAAGTTGAAAGTACTCCTCAACAAGGGAAATCTGAAATTACTATGGTTAGGGAGGAAGTGGATATAATTGATGCTTCCAAGGGTGAGAGTGTTGCTTCTCCACACACACAAAAAAGAAAAGTTATAAGCAACACTGACAGAAATACAAAAGCTCCAAACAAAGTAGGTGTTCATAGTGATTCATATGAAATGAGAGCAAATCGAAAAAAGATAAAAGTAGACTGGACACCTGAGCTGCACAAAAAGTTTGTGAAGGCAGTGGAGCAACTAGGCATTGATCAAGCCATTCCTTCTCGGATATTGGAATTAATGAAAGTGGAGGGCTTGACTAGGCATAATGTGGCAAGCCATCTTCAGAAGTATAGAATGCACAAGAGACATATCTTGCCCAAGGAAGAAGAACGAAAATGGTTGAATCAACAAGAAAGGAGCTATTGTGTTCAAAGGCCAATTATGGCATTTCCTCCATATCATTCTAATCACACCCTTCCTCTGGCTCCTGTATATCCTATGTGGGGACAATCTGGTGGTCACACGGCCAGCATGCAGATTTGGGGCACTCCTGGTTATCCCTTGTGGCAGCAGTCTACTGCTGAAAATTGGCACTGGAATCCATTTCCAGGGATGCATGCAGATGCATGGGGCTGTCCAGTGTTACCAGTACCACCTCCTCAAGCTCCTGGTTTTCCCTGCTCTCAGAATATGCCTGCGTTGCTTAATGCTGATGCAGCAGATCACACATTTACCATGCCACAAAGTTTCATCGAGCATTATCCGGCAGAGGAGGTAGTTGACAAGGTTGTGAAAGAGGCAATAAGCAAACCATGGCTACCCTTGCCTTTGGGTTTGAAACCTCCTTCCACAGATAGTGTGTTGGCTGAGTTATCAAGACAAGGCATTTCCAGCATCCCTCCAAAGGGTTCAAATTCAGGCTGA 1779 0.434 MVFTANELQEWKDFPKGLKVLLLEGDNISAAEIRAKLEAMDYNVSTFCDENEALLAISSGLESFHIAIVEVSSSSGQGGFKFLENAKDLPTIMASNNHCLNTMMKCIALGAVEFLSKPLSEDKLRNIWQHVVHKQAFNAGASILSESLKPVKESVASMLQLQTDNEQHESRVTIDIEKVSSFVDNDHELSPGNDKYPAPSTPQLRQGTRLLDDGDCQEQTNCSTEKESGEHDGESKSVETTCGNLNVESTPQQRKSEITLVREEVESTPRPGKSEITFVREEVESTPQQGKSEITMVREEVDIIDASKGESVASPHTQKRKVISNTDRNTKAPNKVGVHSDSYEMRANRKKIKVDWTPELHKKFVKAVEQLGIDQAIPSRILELMKVEGLTRHNVASHLQKYRMHKRHILPKEEERKWLNQQERSYCVQRPIMAFPPYHSNHTLPLAPVYPMWGQSGGHTASMQIWGTPGYPLWQQSTAENWHWNPFPGMHADAWGCPVLPVPPPQAPGFPCSQNMPALLNADAADHTFTMPQSFIEHYPAEEVVDKVVKEAISKPWLPLPLGLKPPSTDSVLAELSRQGISSIPPKGSNSG 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0642 592 MobiDBLite consensus disorder prediction 184 256 - -
Aed6g0642 592 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Aed6g0642 592 MobiDBLite consensus disorder prediction 196 223 - -
Aed6g0642 592 SUPERFAMILY Homeodomain-like 350 408 IPR009057 -
Aed6g0642 592 MobiDBLite consensus disorder prediction 238 256 - -
Aed6g0642 592 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 351 406 IPR006447 GO:0003677
Aed6g0642 592 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 589 IPR044825 GO:0003700|GO:0045893
Aed6g0642 592 SUPERFAMILY CheY-like 16 140 IPR011006 -
Aed6g0642 592 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 348 407 IPR017930 -
Aed6g0642 592 Gene3D - 347 409 - -
Aed6g0642 592 SMART REC_2 18 128 IPR001789 GO:0000160
Aed6g0642 592 Pfam Myb-like DNA-binding domain 354 403 IPR001005 -
Aed6g0642 592 Gene3D - 15 136 - -
Aed6g0642 592 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR2 1 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0642 Aed-Chr6 5450206 5457627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0642 1 585 Response Regulator Gene Family AT4G18020 47.805 2.91e-138 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Aed6g0642 Myb_DNA-binding 1.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0642 - - gmx:100820385 1004.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1546 11 19666643 19672336 Aed6g0642 6 5450206 5457627 PCT