LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed6g0389	ATGGCATTTGCAGGAACAACCCAGAAGTGTATGGCTTGTGACAAAACTGTTTATCTGGTTGATAAGTTGACTGCAGATAACCGTGTGTTCCACAAAGCTTGCTTCAGATGCCATCACTGCAAAGGAACCCTCAAGCTGAGCAACTACAACTCTTTTGAGGGAGTTCTTTACTGCAGGCCACACTTTGACCAACTGTTCAAAAGAACTGGGAGCCTTGACAAAAGCTTTGAAGGGACACCAAAAATTGCCAAGCCAGAGAAAAATTTGGAAGAGAAACCTGCAGCAGCCAAAGCCTCGAGTATGTTTGGTGGAACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTGTATCCCACTGAGAAGGTTACTGTGAATGGAACTCCTTACCATAAGAGTTGTTTCAAATGCTGTCATGGAGGGTGTGTTATCAGTCCTTCCAATTACATAGCGCACGAGGGAAAACTCTACTGCAAACACCACCATATCCAATTGATCAAGGAGAAGGGCAATTTAAGCCAACTCGAAGGCGACAGTGAGAAGAGTGCAGTTAATGGGAAAACCAACGGTGAAGAAGTTGCCGCGGAGACATGA	591	0.4518	MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIAKPEKNLEEKPAAAKASSMFGGTRDKCAGCQKTVYPTEKVTVNGTPYHKSCFKCCHGGCVISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGDSEKSAVNGKTNGEEVAAET	196

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed6g0389	196	PANTHER	GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN	1	182	-	-
	Aed6g0389	196	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	36	76	-	-
	Aed6g0389	196	Pfam	LIM domain	10	64	IPR001781	-
	Aed6g0389	196	Pfam	LIM domain	109	163	IPR001781	-
	Aed6g0389	196	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	135	174	-	-
	Aed6g0389	196	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	3	35	-	-
	Aed6g0389	196	ProSiteProfiles	LIM domain profile.	107	167	IPR001781	-
	Aed6g0389	196	CDD	LIM2_SF3	109	169	-	-
	Aed6g0389	196	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	101	134	-	-
	Aed6g0389	196	PANTHER	OS06G0237300 PROTEIN	1	182	IPR045268	GO:0051015
	Aed6g0389	196	ProSitePatterns	LIM zinc-binding domain signature.	10	44	IPR001781	-
	Aed6g0389	196	ProSiteProfiles	LIM domain profile.	8	68	IPR001781	-
	Aed6g0389	196	SMART	lim_4	108	160	IPR001781	-
	Aed6g0389	196	SMART	lim_4	9	61	IPR001781	-
	Aed6g0389	196	Gene3D	Cysteine Rich Protein	104	173	-	-
	Aed6g0389	196	Gene3D	Cysteine Rich Protein	4	74	-	-
	Aed6g0389	196	MobiDBLite	consensus disorder prediction	173	196	-	-
	Aed6g0389	196	CDD	LIM1_SF3	6	68	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed6g0389	Aed-Chr6	3379812	3381787	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	LIM	Aed6g0389		LIM	1.5e-12	CL0167

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed6g0389	6	3379812	3381787	Aed6g0389	6	3379812	3381787	ECH
	Aed6g0389	6	3379812	3381787	Aed4g1592	4	20686686	20688522	PCT