Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0385 ATGTTGTGTGCTTGTTCCGGGGAGCAATTCAAATTTGAAGAGGCGCCGCCTCGGTCACCGGAGTCCTTGGCAACAAGGGATTTCTCTGCAAGTGGCCTTTCTTCAAGGACTGGGGATTGGGAATCCAAATTTGATGAAACACAAGTGGAAGATGTTGAATCTACTCTAAAAGAAGCTCTCTCATTAAACTATGAGGAAGCTCGGGCTTTGTTGGGGAGGCTTGAATACCAAAGAGGGAACTTTGATGCTTCCCTTCAAGTGTTTGAGGGTATAGACATTAGGGCTTTAGCCCCAAGGATGATCAAGGCTATAGCTGAAAGAACCAAGCAAAGAAAACCAAGGTCCAAGGTCGATAATGTGCTTTCTAATGTGATGTCAATGCATTCAGTAAGCCTGCTTCTTGAGGCAATTTTGCTTAAATCCAAATCCTTAGAAGAACTTGGGCGATACACTGAGGCTGCAAAGGAGTGCAGAATTGTTGTGGATACAGTTGAATCAGCTCTTCCTAATGGAATGCCTGAAGGTATTGGTGAAGATTGCAAGTTGCAAGAAATGTTCCACAAAGCATTGGAGTTGCTTCCAAATCTATGGATCAAGGCATTTTTGCTAGATGAAGCTGTCACTGCTTATCGACGAACTCTAGTCAAGCCCTGGAATTTGGAGCCGCGGAGGTTGGCCTGTGTACAAAAAGATTTAGCTACCACACTACTCTATGGAGGTGTTGAAGTAAATGGTCTAACAACACCTATGAGTGGCATCGAAGAGGCTATACTTTTGCTATTAATACTCTCAGGAAAGATGGCACTTCAGGAAATAGATTGGGACCCTGAAATAATGGACCATCTTACATTTTCACTTTCAATTACTGGGATGTTTGAATCATTGGCTGATCATGTAGAGAAGATCCTTCCAGGTGTTTATGATCGAGCTGAGAGGTGGTACTTTCTTGCTCTTTGTTACGGTGCAGCAGGACACAATGAAGTAGCCTTGAACCTTTTGAGGAAGGCTTGTGGTAGTTCTGAAGCAAAGCATAGACCCCATTTCCCTTCATTTTTGTTTGGTGCAAAGCTGTGTTCTTTACATCCAAACCATGCTCATGAAGGCATTAAATTTTCACAGGAAGTTATTGATCTAGCCAAGGATCAAAATGAGCACTTTTTGGCTCAGGGCCAAAAATTTCTTGGCATTTGCCATGGGGCTGCTGCTAGAATATCTGTACTAGATTCTGAGAGAATCATATTTCAAAGAGAGTCTTTGAAGTTTCTAAATGATGCTGCTCTAAATGGAAATAATGACCCAGAGCCGGAGGTGATATTCAGCCTTGGATTAGAGAATGCAATTCAAAGAAATCTAAATGCAGCTTATGACAATATAATGATGTACTCAGACATCATGGCTGACAGCTCAAGAAGAGGTTGGCAGCTGTTAGCACTCATATTATCAGCACAGCAGCGGTTTAAGGATGCGGAAACTATAGTTGATTTTGCTTTGGATGAGACTGGTAGTATTGACCAGTTAGAACTACTGAGACTGAAAGCTATACTTCAAATTACTCAGCAGCAACCCAAGCAAGCAATAGAGACCTACAGAATCTTGCTAGCAGTAATTGAAGCACAAAAAGAGCACTGGCTTCAATCTAAGACATTCTGGCATGAGGCATTAACAGAACAGAAGTTGGAAATGGAAGCCTGGCAGGATTTGGCTACCATTTATGCAGATCTTAGCTCCTTTCTTGATGCAAAAGCTTGTGTTGACAAGGCACAGTTGATAGAATTTTTTTCTCCCAGAAGTTGGCATATTACTGGGTTATTGTTTGAATCTCAATCATTACATAAGGAGGCCCTTGTTTCCTTCTCAGTCTCGCTGTCAGTTGAACCGGATTACATTCCCAGTATCATTTCAACAGCAAAATTGTTGCTTAAACTTGGCATGCAATCACTCCCTATTGCAAGAAGCTTTTTAATGAATGCTTTGAGATTAGACCCCACAAATCATGATGCATGGTTTAACCTTGGATTGGCTTCAAAAATGGAAGGTTCATTACAACAAGCAGCAGATTGCTTTCAAGCTGCATATGAGCTGAATCTTTCAGCTCCAGTGCAAAAATTCGAGTGA 2115 0.417 MLCACSGEQFKFEEAPPRSPESLATRDFSASGLSSRTGDWESKFDETQVEDVESTLKEALSLNYEEARALLGRLEYQRGNFDASLQVFEGIDIRALAPRMIKAIAERTKQRKPRSKVDNVLSNVMSMHSVSLLLEAILLKSKSLEELGRYTEAAKECRIVVDTVESALPNGMPEGIGEDCKLQEMFHKALELLPNLWIKAFLLDEAVTAYRRTLVKPWNLEPRRLACVQKDLATTLLYGGVEVNGLTTPMSGIEEAILLLLILSGKMALQEIDWDPEIMDHLTFSLSITGMFESLADHVEKILPGVYDRAERWYFLALCYGAAGHNEVALNLLRKACGSSEAKHRPHFPSFLFGAKLCSLHPNHAHEGIKFSQEVIDLAKDQNEHFLAQGQKFLGICHGAAARISVLDSERIIFQRESLKFLNDAALNGNNDPEPEVIFSLGLENAIQRNLNAAYDNIMMYSDIMADSSRRGWQLLALILSAQQRFKDAETIVDFALDETGSIDQLELLRLKAILQITQQQPKQAIETYRILLAVIEAQKEHWLQSKTFWHEALTEQKLEMEAWQDLATIYADLSSFLDAKACVDKAQLIEFFSPRSWHITGLLFESQSLHKEALVSFSVSLSVEPDYIPSIISTAKLLLKLGMQSLPIARSFLMNALRLDPTNHDAWFNLGLASKMEGSLQQAADCFQAAYELNLSAPVQKFE 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0385 704 Coils Coil 57 77 - -
Aed6g0385 704 SUPERFAMILY TPR-like 57 337 IPR011990 GO:0005515
Aed6g0385 704 Gene3D Tetratricopeptide repeat domain 33 385 IPR011990 GO:0005515
Aed6g0385 704 PANTHER PROTEIN NPG1 1 703 IPR043376 -
Aed6g0385 704 ProSiteProfiles TPR repeat profile. 665 698 IPR019734 GO:0005515
Aed6g0385 704 SUPERFAMILY TPR-like 431 588 IPR011990 GO:0005515
Aed6g0385 704 MobiDBLite consensus disorder prediction 12 39 - -
Aed6g0385 704 PANTHER PROTEIN NPGR1 1 703 - -
Aed6g0385 704 Gene3D Tetratricopeptide repeat domain 415 700 IPR011990 GO:0005515
Aed6g0385 704 SUPERFAMILY TPR-like 562 695 IPR011990 GO:0005515
Aed6g0385 704 SMART tpr_5 310 343 IPR019734 GO:0005515
Aed6g0385 704 SMART tpr_5 561 594 IPR019734 GO:0005515
Aed6g0385 704 SMART tpr_5 506 539 IPR019734 GO:0005515
Aed6g0385 704 SMART tpr_5 470 503 IPR019734 GO:0005515
Aed6g0385 704 SMART tpr_5 665 698 IPR019734 GO:0005515
Aed6g0385 704 SMART tpr_5 595 628 IPR019734 GO:0005515
Aed6g0385 704 MobiDBLite consensus disorder prediction 24 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0385 Aed-Chr6 3343349 3347603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0385 1 703 Calmodulin-binding Proteins AT1G27460 58.865 0.0 850
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0385 6 3343349 3347603 Aed6g0385 6 3343349 3347603 ECH
Aed6g0385 6 3343349 3347603 Aed4g1589 4 20671269 20674866 PCT