Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0382 ATGGGAACGGAAGGTTACACTTACATGGGACGCAGTTTGAGCGAGCTAAGAATCAACGATGATTCCTCTTCCTCCGCCTTCAGCGACTGCAACAGTGACAGATCTGGCGAATTCGCCACCGCATCTTCACAAACGCGGCGGTTTCTGATTGCCTGCGCCACCGAAAATTCCGACGACTTGATCCGCCAACTCGTCGCCGATCTCCACTCCTCCTCCGCCGATGATCAGAAACAAGCCGCCATGGAAATCCGATTACTCGCCAAGAACAAGCCGGAGAATCGCATCAAAATCGCGAAAGCCGGCGCAATCAAGCCGTTAATTTCTCTCATTTCGTCGCCGGACCTTCAGCTTCAGGAATACGGAGTCACCGCGATTTTGAATCTCTCGCTCTGCGACGAGAACAAGGATGTGATAGCCTCCTCCGGCGCGATCAAGCCACTGGTTCGCGCGCTGAACACGGGAACCGCGACGGCGAAGGAGAACGCGGCGTGCGCGCTGCTGCGGCTCTCGCAGGTGGAGGAGAACAAGGCAGCGATCGGGCGGTCCGGCGCGATTCCGCTGCTGGTGAACCTCTTGGAGAGCGGCGGGATCCGCGGGAAGAAGGACGCATCCACGGCACTCTACTCGCTGTGCACGGTGAAGGAGAACAAAATCAGGGCGGTGAAGGCGGGGATCATGAAGGTGCTGGTGGAGCTGATGGCGGACTTCGAGTCGAACATGGTGGACAAGTCGGCGTACGTGATGAGCGTGCTGGTGTCGGTGCCGGAGGCTAGGGCGGCGCTGGTGGAGGAAGGAGGCGTTCCGGTGCTGGTGGAGATCGTGGAGGTTGGGACGCAGAGGCAGAAGGAAATCGCGGTGGTTATACTTTTACAGGTGTGCGAGGACAGCGTGGCGTTTCGCACCATGGTGGCCCGCGAAGGTGCGATTCCTCCTTTGGTCGCTTTGTCTCAGTCCGGCACCAATCGCGCCAAGCAAAAGGCGGAGAAATTAATTGAGCTTCTGCGGCAACCAAGATCCGGCAACGGCGCTGCTCGTAGTACTACATCAGAAGTGGTGGCGTAA 1062 0.5829 MGTEGYTYMGRSLSELRINDDSSSSAFSDCNSDRSGEFATASSQTRRFLIACATENSDDLIRQLVADLHSSSADDQKQAAMEIRLLAKNKPENRIKIAKAGAIKPLISLISSPDLQLQEYGVTAILNLSLCDENKDVIASSGAIKPLVRALNTGTATAKENAACALLRLSQVEENKAAIGRSGAIPLLVNLLESGGIRGKKDASTALYSLCTVKENKIRAVKAGIMKVLVELMADFESNMVDKSAYVMSVLVSVPEARAALVEEGGVPVLVEIVEVGTQRQKEIAVVILLQVCEDSVAFRTMVAREGAIPPLVALSQSGTNRAKQKAEKLIELLRQPRSGNGAARSTTSEVVA 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0382 353 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 142 184 IPR000225 GO:0005515
Aed6g0382 353 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 5 344 - -
Aed6g0382 353 Gene3D - 200 334 IPR011989 -
Aed6g0382 353 Pfam Armadillo/beta-catenin-like repeat 132 170 IPR000225 GO:0005515
Aed6g0382 353 Pfam Armadillo/beta-catenin-like repeat 91 129 IPR000225 GO:0005515
Aed6g0382 353 Pfam Armadillo/beta-catenin-like repeat 174 211 IPR000225 GO:0005515
Aed6g0382 353 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 101 143 IPR000225 GO:0005515
Aed6g0382 353 SMART arm_5 172 212 IPR000225 GO:0005515
Aed6g0382 353 SMART arm_5 90 130 IPR000225 GO:0005515
Aed6g0382 353 SMART arm_5 254 294 IPR000225 GO:0005515
Aed6g0382 353 SMART arm_5 131 171 IPR000225 GO:0005515
Aed6g0382 353 SMART arm_5 213 253 IPR000225 GO:0005515
Aed6g0382 353 PANTHER U BOX DOMAIN-CONTAINING 5 344 - -
Aed6g0382 353 Gene3D - 32 198 IPR011989 -
Aed6g0382 353 SUPERFAMILY ARM repeat 58 331 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0382 Aed-Chr6 3311644 3315357 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0382 11 341 U-box Gene Family AT2G23140 47.164 1.06e-87 275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0382 6 3311644 3315357 Aed6g0382 6 3311644 3315357 ECH
Aed6g0382 6 3311644 3315357 Aed4g1582 4 20616022 20618077 PCT