Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0378 ATGGAACCTGTAGGAGCCTTCCCTGATGGAGAATGGGAATGCTTTCGCAGAATATTTGCAAGTGATGAGCATGATTATGATTTATTCACACCCCAATTTCCACTCCTTCTTGACGGTGGTGATGATGATTTGAACAACATTGTGACACACCACACATTTTGTGCTGCTGCTCCCGATCAAGCCGGTGAAAAGGAGCGTATGTTTTATTCACAAGAAAGTAGCTATAGTAATAGTAGCAATTGTAGTGGTGGTGATTATCATGACACTACTGTTTTCATTGCAAATCCGGGTGGCACAAACTATTATTTTAGTTACCCTGATCACCATGTGCTGGCAAATAATAATAATAATGCATGTGTATATTCCATGGATCATGAGAAACATTTTGCCTCTTTTGTCCCTTGGCTTGTTGACAATACTGTAACGGAAGAGGAGGGTGCTAAGTTGTATGAAGATGTGGCAAGTGATCACAGATTGGAGAATTCTGAATGCAATCGAATATTGCAACCTATTGTTTTTCCCACCAAAAGGAAGCTTGATGTGCCTGCTGAAGATAAAATGAACAACAGAGGATCTGAGAATCAAAAGAAAAAGGCTCGTGTTTTAAAAGATGGGCAAGCAGGATGCATGAAAAACGCATGGTCCAAGAAGAATGAGAAACATGGCAGCAATGGGGAAGATACAGAAGAGACTAATTTAGGATCAGATGGTCAAAGCTCTAGCAGTAACATGTCAGAGGATGATAACAAAGAGAATAGTGGAGGAACTACTTCAGCCTCTAAGTCTGCTCTCAACTCAAATGGAAAAACAAGAGCAAGTAGGGGATCAGCAACAGATCCACAGAGTCTGTATGCAAGGAAAAGAAGAGAGAGAATAAATGAGAGACTAAGAATCCTACAGAGTCTTGTCCCAAATGGAACCAAGGTTGATATAAGCACAATGCTTGAAGATGCAGTCAATTACGTGAAATTTTTGCAGCTCCAGATCAAGCTTTTAAGCTCCGATGATCTATGGATGTACGCTCCTCTTGCTTATAATGGGCTTGACATGGGACTCAATTTCAATCTCAACCTCAAGAACTCCTAA 1086 0.4061 MEPVGAFPDGEWECFRRIFASDEHDYDLFTPQFPLLLDGGDDDLNNIVTHHTFCAAAPDQAGEKERMFYSQESSYSNSSNCSGGDYHDTTVFIANPGGTNYYFSYPDHHVLANNNNNACVYSMDHEKHFASFVPWLVDNTVTEEEGAKLYEDVASDHRLENSECNRILQPIVFPTKRKLDVPAEDKMNNRGSENQKKKARVLKDGQAGCMKNAWSKKNEKHGSNGEDTEETNLGSDGQSSSSNMSEDDNKENSGGTTSASKSALNSNGKTRASRGSATDPQSLYARKRRERINERLRILQSLVPNGTKVDISTMLEDAVNYVKFLQLQIKLLSSDDLWMYAPLAYNGLDMGLNFNLNLKNS 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0378 361 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 276 340 IPR036638 GO:0046983
Aed6g0378 361 MobiDBLite consensus disorder prediction 179 204 - -
Aed6g0378 361 Pfam Helix-loop-helix DNA-binding domain 286 326 IPR011598 GO:0046983
Aed6g0378 361 MobiDBLite consensus disorder prediction 228 280 - -
Aed6g0378 361 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 3 357 - -
Aed6g0378 361 CDD bHLH_AtIND_like 277 339 - -
Aed6g0378 361 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 276 325 IPR011598 GO:0046983
Aed6g0378 361 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 3 357 - -
Aed6g0378 361 MobiDBLite consensus disorder prediction 179 288 - -
Aed6g0378 361 SMART finulus 282 331 IPR011598 GO:0046983
Aed6g0378 361 Gene3D - 278 334 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0378 Aed-Chr6 3249487 3251419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0378 251 352 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 80.374 3.16e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed6g0378 HLH 1.2e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0378 6 3249487 3251419 Aed6g0378 6 3249487 3251419 ECH