Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0377 ATGGCTTTGGAAGCTCTGAACTCACCTACAGCAACCGCTCCATCTTTCCCCTTCGACGACCCAACTATTCCATGGGCCAAACGCAAGCGTTCCAAGCGTTCTTCACGCGACCACCCTTCCGAAGAAGAGTACCTCGCTCTCTGCCTCATCATGCTCGCTCGCGGCGGCACTAACCGCCACGTCACTCCTCCGCCGCCACAGTCCCAACCACAACCGACCGTAGCAGATCCTTCTTCCACCAAGCTCACTTACAAATGCTCCGTTTGCCACAAAAGCTTCCCCTCTTACCAAGCGCTCGGCGGACACAAGGCCAGTCACCGGAAACTCGCCGCCGGAGGCGGCGATGACCAGCCCACCACCACCTCCTCCGCCGCCACCGCCACCAGCTCCGCCAACACCGCCTCCGGGGCTGCTGCTGGTAGGACCCACGAGTGCTCCATCTGCCACAAATCCTTCCCCACCGGACAGGCACTTGGCGGACACAAACGTTGTCACTACGAAGGTAATAACAGTAACAGCGTTGTCACCGCCTCGGAAGGGGTGGGCTCCACCCACACCGTCAGTCACCGCGACTTTGATCTCAACATCCCGGCTTTTCCGGATTTTTCGGCCAAGGTCGGAGAAGACGAGGTTGAGAGCCCTCACCCAGTCATGAAGAAGCCGCGTCTCTTCGCGATTCCCAAGATCGAAATCCCTCAGTTTCAATGA 708 0.589 MALEALNSPTATAPSFPFDDPTIPWAKRKRSKRSSRDHPSEEEYLALCLIMLARGGTNRHVTPPPPQSQPQPTVADPSSTKLTYKCSVCHKSFPSYQALGGHKASHRKLAAGGGDDQPTTTSSAATATSSANTASGAAAGRTHECSICHKSFPTGQALGGHKRCHYEGNNSNSVVTASEGVGSTHTVSHRDFDLNIPAFPDFSAKVGEDEVESPHPVMKKPRLFAIPKIEIPQFQ 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0377 235 MobiDBLite consensus disorder prediction 1 40 - -
Aed6g0377 235 SUPERFAMILY beta-beta-alpha zinc fingers 83 165 IPR036236 -
Aed6g0377 235 SMART c2h2final6 84 106 IPR013087 -
Aed6g0377 235 SMART c2h2final6 143 165 IPR013087 -
Aed6g0377 235 MobiDBLite consensus disorder prediction 115 135 - -
Aed6g0377 235 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Aed6g0377 235 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 106 IPR013087 -
Aed6g0377 235 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 226 IPR044653 GO:0003700
Aed6g0377 235 Gene3D Classic Zinc Finger 81 165 - -
Aed6g0377 235 ProSitePatterns Zinc finger C2H2 type domain signature. 145 165 IPR013087 -
Aed6g0377 235 MobiDBLite consensus disorder prediction 107 135 - -
Aed6g0377 235 Pfam C2H2-type zinc finger 143 166 - -
Aed6g0377 235 Pfam C2H2-type zinc finger 84 108 - -
Aed6g0377 235 MobiDBLite consensus disorder prediction 56 78 - -
Aed6g0377 235 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 170 IPR013087 -
Aed6g0377 235 PANTHER ZINC FINGER PROTEIN ZAT10 1 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0377 Aed-Chr6 3241898 3242605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0377 1 231 C2H2 Transcription Factor Family AT1G27730 51.406 1.11e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed6g0377 zf-C2H2_6 1.6e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0377 6 3241898 3242605 Aed6g0377 6 3241898 3242605 ECH
Aed6g0377 6 3241898 3242605 Aed4g1576 4 20578631 20579347 PCT