Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0357 ATGGCATCATCGGGAAGAAGGGAAATGGATCGGGTGAAGGGTCCATGGAGCCCAGAAGAGGACGAGGCGCTGAGGAGGCTGGTTCAGGCCCACGGGCCCAGAAACTGGTCGGTGATAAGCAAGTCCATTCCTGGGCGATCCGGGAAATCCTGCCGTTTGCGCTGGTGCAACCAGCTCTCCCCGGGGGTGGAGCACCGCCCCTTCTCCACGGAGGAGGACGAGGCCATCGTCAGGGCCCACGACAGGTTCGGTAACAAGTGGGCCACCATAGCTCGCTTGCTCAACGGCCGCACCGATAACGCCGTCAAGAACCACTGGAACTCCACTCTCAAGAGAAAATGCTCCGCCGTTAGTGACGACGTCGCGGATCGCCAGCCTCTTAAAAGATCCGCCAGCGTCGGCGCGGCCCACTTGAACCCAGGCAGCCCATCGGGGTCCGATTTGAGCGATCCGGGCCTGCCCGCTCTGTCAAACCCCTCAGCCTCGGCCCATTACAGGCCCAATCTGATGGAAACTGCTTCTTCTGCTTCCGATCCAGCAACGTCACTGAGTTTGTGTCTCCCCGGGTTCGGGTCCGGGTCCAACACGGTGAGCGTAGCTCAACCAGTGTCGCCTCCTCCACTTCCACCGCCACCGCCTCCGGCGGCGACGGTGGAGGAGCGTGGGAAGCAACTGTTCAACGCGGAGTTCTTGCGAGTGATGCAAGAGATGATCAGAAAGGAAGTGAGGAGTTACATGTCCGGGATGGAACAGAAGAATGGACTCAGAATACAAACCGAAGCGATTGGGAACGCGGTGGTGAAGCGCATGGGAATTAGCCACATCGAGTGA 831 0.5981 MASSGRREMDRVKGPWSPEEDEALRRLVQAHGPRNWSVISKSIPGRSGKSCRLRWCNQLSPGVEHRPFSTEEDEAIVRAHDRFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCSAVSDDVADRQPLKRSASVGAAHLNPGSPSGSDLSDPGLPALSNPSASAHYRPNLMETASSASDPATSLSLCLPGFGSGSNTVSVAQPVSPPPLPPPPPPAATVEERGKQLFNAEFLRVMQEMIRKEVRSYMSGMEQKNGLRIQTEAIGNAVVKRMGISHIE 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0357 276 MobiDBLite consensus disorder prediction 117 163 - -
Aed6g0357 276 SUPERFAMILY Homeodomain-like 10 106 IPR009057 -
Aed6g0357 276 Gene3D - 12 64 - -
Aed6g0357 276 MobiDBLite consensus disorder prediction 202 216 - -
Aed6g0357 276 CDD SANT 15 57 IPR001005 -
Aed6g0357 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 114 IPR017930 -
Aed6g0357 276 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Aed6g0357 276 ProSiteProfiles Myb-like domain profile. 8 59 IPR001005 -
Aed6g0357 276 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 9 246 - -
Aed6g0357 276 PANTHER MYB PROTEIN-RELATED 9 246 - -
Aed6g0357 276 Pfam Myb-like DNA-binding domain 13 59 IPR001005 -
Aed6g0357 276 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Aed6g0357 276 CDD SANT 67 110 IPR001005 -
Aed6g0357 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 63 IPR017930 -
Aed6g0357 276 MobiDBLite consensus disorder prediction 1 21 - -
Aed6g0357 276 Gene3D - 66 132 - -
Aed6g0357 276 SMART sant 12 61 IPR001005 -
Aed6g0357 276 SMART sant 64 112 IPR001005 -
Aed6g0357 276 MobiDBLite consensus disorder prediction 197 216 - -
Aed6g0357 276 MobiDBLite consensus disorder prediction 137 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0357 Aed-Chr6 3092870 3093700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0357 1 253 MYB Transcription Factor Family AT4G37260 51.379 1.52e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed6g0357 Myb_DNA-binding 6.8e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0357 6 3092870 3093700 Aed6g0357 6 3092870 3093700 ECH
Aed6g0357 6 3092870 3093700 Aed4g1546 4 20411213 20411881 PCT