Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0339 ATGAATAACAATTCCCTGTTCCTCCACAATGCAAATACAATCCACTTCAATTTCCACTCTCACTCCCTTTCTTTCATTCCACGAACAAGAACAACAACACTCTCACTCAAACCCCTTCGTTTCCAACCACGCATTCAATGCTGCAGCAACAGTAACATTAACAGCATCGAAATCGACATGGTTAAGAACAGCGAAGGCATCTACGCCCCCAAAAACGACAAGGTGGTCGTCCTCTGGGACCTGGACAACAAGCCCCCACGCGGGCCTCCCTACGACGCCGCCGTTTCGCTCAAATCCCTAGCCACGCGCTTCGGCGAGCTAGTCGACTTCTCCGCCTACGCCAACCGCCACGCCTTCGTCCACCTCCCCCAGTGGGTCCTACACCAGCGCCGCGACCGCAGAGACCTCGACATCCTCGAACGCAAGGGCATAATCACCCCTCCCGAGCCCTACACGTGCGGCGTCTGCGGCCGCAAGTGCAAGACCCACTTAGACCTCAAAAAACACTTCAAGCAGCTCCACCAGCGCGAACGCCAGAAGAAGCTCAATCGCTTGAAATCCCTCAAGGGGAAGAAACGCCACCGTTTCAAGGAAAGGTTTTTGCGCGGGAATCACAAGTACGACGACGCGGCCAGGTCGCTGGTTGTTCCCAAGGTCGGCTACGGACTTGCGGCCGAACTGCGGCGCGCCGGGGTGTTTGTGAAGACTGTGCAGGACAAGCCGCAGGCCGCGGATTGGGCGCTTAAGAGGCAGATGGTGCATTCCATGAGCAGAGGGATTGACTGGCTGTTTTTGGTTTCCGACGATTCTGATTTTTCGGACATGCTGAGGAGGGCCAGGGAGGCCGATTTGGGGACCGTGGTGGTCGGAGATTGGGATAGGGCGCTGGGCCGCCACGCCGATTTGTGGGTGCCGTGGAGCGGGGTGGAGAATGGGGAGCTGGGTGATTTGGTGCCCAAGAGAAAAACAAGAACAAGAATGGAGAATAGAACTAGAGAACGTGGTTTTGGTAGGGTTGAATTGATTGCTCCCTCCCATGGTGGAATCAAGTCTGATTTTTTAGTTGCTGCTTGCAATTCGTGTTTTCTTTACCTTCCTGCTAAAGCTAGTGCAGCTTAA 1119 0.5478 MNNNSLFLHNANTIHFNFHSHSLSFIPRTRTTTLSLKPLRFQPRIQCCSNSNINSIEIDMVKNSEGIYAPKNDKVVVLWDLDNKPPRGPPYDAAVSLKSLATRFGELVDFSAYANRHAFVHLPQWVLHQRRDRRDLDILERKGIITPPEPYTCGVCGRKCKTHLDLKKHFKQLHQRERQKKLNRLKSLKGKKRHRFKERFLRGNHKYDDAARSLVVPKVGYGLAAELRRAGVFVKTVQDKPQAADWALKRQMVHSMSRGIDWLFLVSDDSDFSDMLRRAREADLGTVVVGDWDRALGRHADLWVPWSGVENGELGDLVPKRKTRTRMENRTRERGFGRVELIAPSHGGIKSDFLVAACNSCFLYLPAKASAA 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0339 372 CDD PIN_LabA-like 161 291 - -
Aed6g0339 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 179 IPR013087 -
Aed6g0339 372 PANTHER - 49 332 - -
Aed6g0339 372 Coils Coil 171 191 - -
Aed6g0339 372 ProSitePatterns Zinc finger C2H2 type domain signature. 153 174 IPR013087 -
Aed6g0339 372 Gene3D - 68 307 - -
Aed6g0339 372 PANTHER OS06G0166200 PROTEIN 49 332 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0339 5 337 C2H2 Transcription Factor Family AT5G52010 65.588 3.82e-161 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed6g0339 None None None