Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0330 ATGCAAGGGCAGAGAGGTACAATCGGTTCCTTGCCAGAGACCATAGAATTTGATTGTGGGTCTACATCAAGTGCTGCTACAGTTGAACCACATATTTTCTGGAATAATATGCTGAATCCTCCGGAAAATCAATTTGTACTTTCCCCCGGTGATATAAACCCATCGTATGTGAATTCTGTAAACCATGAATGGCAGAACTTGAGTGGATGGAGCTTAGGTGAGCCAAGTTCCAGTAGTATACAGGATGGGGTTACCAACAATGAGCAGAAAAGAGAGCTAGGATTATCCTCATCATTAAGTTCTGGTGCCATAGCCGCCGGTCCAAGACTTGAAGAAAGGCGCTTTGAACCAAACAATACTTTTTCATTGGACAACATCAACACAAGTCCTATGTATATGCGCAGCTCCAGTTCTCACTTGGTGCCGCAAAACCTCAACTTGAATGCAAGTTTAGTTGATAGTGGCACTGATATTAGCTATCATGTGGAACGTCATCCTAACATGAACAAGTCTAGTGGACCAGTGAATGAGCATGTTCCAGTTCCACCAACAATTGGTTCTGGTCCTTTTCTGCTTCCTTCTGTAACCAATGGCTTTTTAGGTGAGGATACTGATGGCACCCGCCGGGTGTCTTGTAAAAGAAAGGCTGTTGAACGAAATGTTAGACAATCTTCAGACGGTGGAAGTTCTAGCTATAGTCAGCATACAGATGGTATTACTTGGAACACTCTTCCTACTCCGGATTATGGGGGGAGCAGTTTTAACAGATCTGCCCCAACGGAACAGGTAAATGCGAGACTTGGCTTGGGTACGGGGTATGGAGCCTCTAAAAGCATTCCTGTGTCAAATGCTGCGGGAAACTCGGAAAGTTTCCACAGAAATTTTCGTCCAAGGATAAGTCCTTCGAGTCAGCAGCTTTCTGTTCCTCCCACTTCAATCTCAAGTGGGAATGTTATTAGGAATTCTGGTGTTTCTTCATCCTCTCCAATATTGCAACGATTTCATCCTGTGGATAATTCTTTGGCCTTGAGGTCAGTACCACCACCTGCTGATACTATGGTTTCTCAAAGTCAAAGTCAGCCCCTTGTTATTCCTGCATTACCGAGGAACGTGCAATCATTCAGATGGAGTGGTGGTTCCGGTTCAACAAACAACCATCCCTCAAACTCAGTTATGCGTGCAGATAGTAATAATCTGCCAAATGAGGAAGCAAGCTCAAGAAGTATGCCTAGAAACATTATAGAATACCCAATGTTTGTGCCTGCAACCAATTTAAGAAACGTTGTTCGAAATCCACCTAGAGCTTCAAATGGTGCAAATTTAAGTATTCCTGTTAGTGTTGGTTCTTCATTGCGGACAGGTGCAACTTCAGCTGTCGTCAATCCACCACCTGCCTCAGCGTGGGTTTCTCGCTCTACTAATCCTCAGCAGTATCCACGCAGGCTATCTGAATATGTTCGCCGGTCCTTGGTTTCTCCTGGTTTGGAAGCTGCTGGAAGTTCAAGCAATAATTATACTTCTTTCCGTGGTCCTTCTACTTCATCTGAGTCAAGGGGACTGCCATCTGGGGTAAACCCATTCGAGAGGCAAGGTGATAGTGAGTTTGGAATTCCATATGCATTGCGATCTTTGGCTGTTGCTGGTGAAGGAAGTAGTAGACTTGTATCTGAGCTCCGCAATGTGTTGGGCATCATGCGTAGGGGTGGGAACCTGCGATTCGAGGATGTTATGGTCCTCGACCATTCAGTGTTATCTGGAATTGCTGATATGCATGATCGACACAGGGATATGCGACTTGATGTTGATAACATGTCTTACGAGGAGCTATTGGCTCTGGAAGAACGCATTGGAAATGTGAACACTGGCTTGAGTGAGGAGACCGTATTGAAGCTTTTGAAAAATAAGAAGTATTCAGCTGAACCGGGTTCTCAGCATGAGGCAGAACCATGCTGTGTTTGTCAGGAGGAGTATAAAGATGGAGATGATCTAGGATCACTGGATTGTGGGCATGACTACCATAAAGATTGTATTAAACAGTGGCTAATGCATAAGAATTGGTGTCCCATTTGCAAGACAACAGGCTTGGCAACCTGA 2094 0.4465 MQGQRGTIGSLPETIEFDCGSTSSAATVEPHIFWNNMLNPPENQFVLSPGDINPSYVNSVNHEWQNLSGWSLGEPSSSSIQDGVTNNEQKRELGLSSSLSSGAIAAGPRLEERRFEPNNTFSLDNINTSPMYMRSSSSHLVPQNLNLNASLVDSGTDISYHVERHPNMNKSSGPVNEHVPVPPTIGSGPFLLPSVTNGFLGEDTDGTRRVSCKRKAVERNVRQSSDGGSSSYSQHTDGITWNTLPTPDYGGSSFNRSAPTEQVNARLGLGTGYGASKSIPVSNAAGNSESFHRNFRPRISPSSQQLSVPPTSISSGNVIRNSGVSSSSPILQRFHPVDNSLALRSVPPPADTMVSQSQSQPLVIPALPRNVQSFRWSGGSGSTNNHPSNSVMRADSNNLPNEEASSRSMPRNIIEYPMFVPATNLRNVVRNPPRASNGANLSIPVSVGSSLRTGATSAVVNPPPASAWVSRSTNPQQYPRRLSEYVRRSLVSPGLEAAGSSSNNYTSFRGPSTSSESRGLPSGVNPFERQGDSEFGIPYALRSLAVAGEGSSRLVSELRNVLGIMRRGGNLRFEDVMVLDHSVLSGIADMHDRHRDMRLDVDNMSYEELLALEERIGNVNTGLSEETVLKLLKNKKYSAEPGSQHEAEPCCVCQEEYKDGDDLGSLDCGHDYHKDCIKQWLMHKNWCPICKTTGLAT 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0330 697 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 694 IPR013083 -
Aed6g0330 697 SUPERFAMILY RING/U-box 642 693 - -
Aed6g0330 697 MobiDBLite consensus disorder prediction 222 243 - -
Aed6g0330 697 SMART ring_2 650 690 IPR001841 -
Aed6g0330 697 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 696 IPR045191 GO:0061630
Aed6g0330 697 MobiDBLite consensus disorder prediction 495 527 - -
Aed6g0330 697 MobiDBLite consensus disorder prediction 210 243 - -
Aed6g0330 697 MobiDBLite consensus disorder prediction 376 407 - -
Aed6g0330 697 ProSiteProfiles Zinc finger RING-type profile. 650 691 IPR001841 -
Aed6g0330 697 CDD RING-H2_TTC3 649 691 - -
Aed6g0330 697 Pfam Ring finger domain 650 691 IPR001841 -
Aed6g0330 697 MobiDBLite consensus disorder prediction 495 521 - -
Aed6g0330 697 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0330 Aed-Chr6 2874322 2880607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0330 1 697 C3H Transcription Factor Family AT2G15530 33.679 1.09e-87 288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0330 6 2874322 2880607 Aed6g0330 6 2874322 2880607 ECH
Aed6g0330 6 2874322 2880607 Aed7g2462 7 26383287 26388696 PCT