Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0329 ATGGGTGGTGACATGCACCAATCACAACCCTCTTTAGGGAGAGCCTTGCCTGATTCAGAAGAATTCTCAACCTTGTTCAACCAACTCCTCCACAACAACTCTCCCCCACTGGGAATGGACCCCAATCATTCACCTTCTGATTTCACCCCACACAACACCAACACTAACCATGTTCCTTCCTCTCCCTCAAGTTTCAATTTCTCTGACCCCCATCATTACAACACCCCTGCCTCTCATGCCAACACCTTCAAACAACAACAACACACCCCTGATTTCACTTCTTCTTCTCTTGAGAAGAGTGTAGAGGCATCAAAATCTGTCCCACCATCACGTTCTTCGTCAAAGAGGAGTAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGAGAAGGAGGAGTAGGATTAACGAGAAAATGAAAGCCTTGCAGAATTTAATTCCAAATTCTAACAAGACAGACAAAGCTTCAATGCTAGATGAGGCCATAGAGTATTTAAAGCAGCTTCAGCTTCAAGTGCAAACTACTGGGTTGAACCTTGATGGGAGCAATGGATTTCAGAATTCTACTAGTGCTGCAATTGCTTCATCTTCAAATGATGAAAGCTTGGTGCGGCATGCTTTTAGTTTTCCAAAGCAATGCAGCATCTCAAATCAGTCTATTGGGGTACCATCAGTCACAAACATAGCTACATCGGATTCCTCACCCACTTTTCATCCCTCTATTAAGGATGCACTCTATGGCAACATGCCACAACTGTTTATGGATACAACAAAGATTGGAAAACCCTCCCCAGATGTGTCTTAA 801 0.4357 MGGDMHQSQPSLGRALPDSEEFSTLFNQLLHNNSPPLGMDPNHSPSDFTPHNTNTNHVPSSPSSFNFSDPHHYNTPASHANTFKQQQHTPDFTSSSLEKSVEASKSVPPSRSSSKRSRAAEFHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQTTGLNLDGSNGFQNSTSAAIASSSNDESLVRHAFSFPKQCSISNQSIGVPSVTNIATSDSSPTFHPSIKDALYGNMPQLFMDTTKIGKPSPDVS 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0329 266 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 118 167 IPR011598 GO:0046983
Aed6g0329 266 MobiDBLite consensus disorder prediction 21 115 - -
Aed6g0329 266 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 27 242 IPR031066 -
Aed6g0329 266 SMART finulus 124 173 IPR011598 GO:0046983
Aed6g0329 266 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 115 174 IPR036638 GO:0046983
Aed6g0329 266 MobiDBLite consensus disorder prediction 116 130 - -
Aed6g0329 266 Pfam Helix-loop-helix DNA-binding domain 122 168 IPR011598 GO:0046983
Aed6g0329 266 Gene3D - 113 175 IPR036638 GO:0046983
Aed6g0329 266 CDD bHLH_AtPIF_like 119 172 - -
Aed6g0329 266 PANTHER TRANSCRIPTION FACTOR SPATULA 27 242 - -
Aed6g0329 266 MobiDBLite consensus disorder prediction 1 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0329 Aed-Chr6 2868801 2872353 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0329 79 176 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 60.000 6.59e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed6g0329 HLH 2.3e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0329 6 2868801 2872353 Aed6g0329 6 2868801 2872353 ECH