Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2563 ATGAGAACCCAACGGCTTAACCATCTTCTTCTCTCCCTCTTCCTCTTCGCAACCGCATTCTCCAACCACAACACGAGGGCCATCGCCGGAAACGTAGGCGACAGGGGAGACACCGATTTCATCCGCAGTAGCTGCAACATCACGCTCTACCCGGATGTGTGCTTCACCTCCCTTTCTCGCTACGCCAATGCTGTGCAGCAGAACCCCGGCCAACTGGCTCGCGTCGCCATCTCCGTGAGCCTCTCGAAGGTCCACCGCGCAGCCTCCTACGTCTCGAACCTCACGCGCGACGCCGACTACAGCGCCAGCACGCGCTCAGCACTCGCTCTCCACGACTGCTTCTCGAACCTGGGAGACGCCGTGGACGAAATCCGCGGGTCGCTGAAGCAGATGCGGCAGATAGGAGCGGCGGGCGCGGGCGCAAGCTCGTTCCTGTTCCAGATGAGCAACGTGCAGACGTGGATGAGCGCTGCGCTGACCGACGAAGAGACCTGTACGGACGGTTTCCAGGACGTAGCGGACTGTCCCGTGAAAACGGATGTATGCGATCGCGTCACCAACGTCAAGAAGTTCACCAGCAATGCTTTGGCGCTCGTCAATTCCTACGCCAACAAGGGAATGCCTTGA 627 0.5997 MRTQRLNHLLLSLFLFATAFSNHNTRAIAGNVGDRGDTDFIRSSCNITLYPDVCFTSLSRYANAVQQNPGQLARVAISVSLSKVHRAASYVSNLTRDADYSASTRSALALHDCFSNLGDAVDEIRGSLKQMRQIGAAGAGASSFLFQMSNVQTWMSAALTDEETCTDGFQDVADCPVKTDVCDRVTNVKKFTSNALALVNSYANKGMP 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2563 208 SMART PMEI_2 36 198 IPR006501 GO:0004857
Aed5g2563 208 CDD PMEI-like_3 43 204 - -
Aed5g2563 208 Pfam Plant invertase/pectin methylesterase inhibitor 39 198 IPR006501 GO:0004857
Aed5g2563 208 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 202 IPR035513 -
Aed5g2563 208 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 202 IPR006501 GO:0004857
Aed5g2563 208 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR SUPERFAMILY PROTEIN 7 205 - -
Aed5g2563 208 PANTHER PECTINESTERASE INHIBITOR-LIKE 7 205 - -
Aed5g2563 208 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 202 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2563 Aed-Chr5 26513246 26513872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2563 35 198 Carbohydrate Esterase AT5G53370 28.313 3.10e-13 65.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2563 5 26513246 26513872 Aed5g2563 5 26513246 26513872 ECH