Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2561 ATGGACAAGCTCTTTTTCAACTGTTTCATTGGATACTGCCTTGTTTATTCCCTCTTGCTTGTGCATGCAGGCAAACAATTGCCATGCAATGAAACTCCATACCCCAGTGTGTGCAAGCATTACACTGAAACAACCAACACATTATCAACCCTAGATGCTTCATCTTCTTCCTTCCATGATGTGGCCCTTAAGGTCACCATGGAGCAAGCCGTTCAGGCTTATAATCTTGTCTCAAACATGGACTTGAATAATTTCAAGGACAAGCGAGCCAAGTCTGCATGGGAAGATTGCATGGAGCTCTATGAGAACACAATCTATCAGCTTAAACGCTCAATGAACTCAAACAATCTAAATGATAGGTTGACTTGGCAAAGTGCATCCATTGCGAACCATCAAACATGCCAAAATGGTTTCAATGAATTCAACCTTCCCTCTCACCTAAACTACTTCCCCTCCATGCTAAGCAACTTCTCTAAATTGCTTAGCAACTCCTTGTCCATTAGCAACGCTATGATGACTTTGACATCACCATCGACCAAACAAATTGGTGGGCGAAGGTTGCTTTCAGATGGCTTATTCCCCTATTGGCTGTCACGTTCAGATAGAAGGCTTCTTCAGGGAACAACATCAAACGCTGATGTTGTGGTGGCACAGGATGGGAGTGGGGACTATAAGACCATCGCAGAGGGTGTGGCTGCAGCTTCTGGACTCAGTGGGAAAGGGCGTGTCGTTGTGCACGTCAAAGCTGGCGTCTACAAAGAGAATATTGATATCAAGAGGACAGTGAGGAACTTAATGATCGTTGGAGATGGGATGGGTGCTACCATTGTTACTGGTAATCGTAACGCACAAGGTGGTTCCACTACTTTCCGTTCTGCTACTTTTGCCGTTGATGGTGACGGGTTCATGGCTCGGGACATAACCTTCGAGAACACCGCGGGGCCGCAAAATCACCAAGCGGTGGCTCTCCGTTCCGGCGCGGACCACTCGGTGTTCTACAGGTGCAGCTTCAAGGGGTACCAAGACACCTTGTATGTCTACGCGAACCGGCAATTCTACCGTGACTGTGACATATACGGAACCATAGACTTCGTTTTCGGTGACGCGGTGTCGGTGCTTCAGAACTGCAACATCTATGTCCGGAAACCGATGAGCAACCAGCTGAACACCGTGACGGCACAAGGAAGAACGGACCCTAACGAGAACACAGGGATCATAATCCATAACTGTCGTATCACTGCCGCTGGGGACTTGAAAGCAGTGCAGGGGTCATTCAAAACCTTCCTAGGTCGCCCATGGCAAAAGTATTCCAGGACTGTCGTCATGAAGAGTGCCCTTGATGGCTTGATTGCCCCCGCAGGATGGTATCCGTGGAGTGGAAGCTTTGGTCTGAGCAGCCTCTATTACGCAGAATATGCAAATACTGGAGCAGGTGCCGGCACAGGAGGGAGAGTGTCATGGGCAGGGTTTCATGTCATCTCCAGTACTGAAGCTATCAAGTTCACCGTTGCTAACTTCTTGGCTGGGGGCTCCTGGATTTCTGGGACCGGCGTGCCCTTTGATGCTGGTTTATGA 1575 0.4876 MDKLFFNCFIGYCLVYSLLLVHAGKQLPCNETPYPSVCKHYTETTNTLSTLDASSSSFHDVALKVTMEQAVQAYNLVSNMDLNNFKDKRAKSAWEDCMELYENTIYQLKRSMNSNNLNDRLTWQSASIANHQTCQNGFNEFNLPSHLNYFPSMLSNFSKLLSNSLSISNAMMTLTSPSTKQIGGRRLLSDGLFPYWLSRSDRRLLQGTTSNADVVVAQDGSGDYKTIAEGVAAASGLSGKGRVVVHVKAGVYKENIDIKRTVRNLMIVGDGMGATIVTGNRNAQGGSTTFRSATFAVDGDGFMARDITFENTAGPQNHQAVALRSGADHSVFYRCSFKGYQDTLYVYANRQFYRDCDIYGTIDFVFGDAVSVLQNCNIYVRKPMSNQLNTVTAQGRTDPNENTGIIIHNCRITAAGDLKAVQGSFKTFLGRPWQKYSRTVVMKSALDGLIAPAGWYPWSGSFGLSSLYYAEYANTGAGAGTGGRVSWAGFHVISSTEAIKFTVANFLAGGSWISGTGVPFDAGL 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2561 524 CDD PMEI-like_3 29 173 - -
Aed5g2561 524 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 20 523 - -
Aed5g2561 524 ProSitePatterns Pectinesterase signature 2. 358 367 IPR033131 -
Aed5g2561 524 SUPERFAMILY Pectin lyase-like 208 523 IPR011050 -
Aed5g2561 524 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 171 IPR035513 -
Aed5g2561 524 Pfam Pectinesterase 213 509 IPR000070 GO:0030599|GO:0042545
Aed5g2561 524 Pfam Plant invertase/pectin methylesterase inhibitor 29 167 IPR006501 GO:0004857
Aed5g2561 524 TIGRFAM PME_inhib: pectinesterase inhibitor domain 29 171 IPR006501 GO:0004857
Aed5g2561 524 Gene3D - 207 524 IPR012334 -
Aed5g2561 524 Gene3D Invertase/pectin methylesterase inhibitor family protein 26 172 IPR035513 -
Aed5g2561 524 PANTHER PECTINESTERASE 20 523 - -
Aed5g2561 524 ProSitePatterns Pectinesterase signature 1. 239 258 IPR018040 -
Aed5g2561 524 SMART PMEI_2 16 167 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2561 Aed-Chr5 26492862 26495474 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2561 4 524 Carbohydrate Esterase AT1G23200 52.355 0.0 543
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2561 5 26492862 26495474 Aed5g2561 5 26492862 26495474 ECH