Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2539 ATGAGAAACTATGTGTATGTGTGTTTGCTACTAGTAGTATTTTTTGGTTTAGCTGAAGCAAAATCGACCATTGAGGCATGCGATTCCTCAGACTCGTGCCTTTCCCTTGTCTCATATCTCTTGCCATGGGATTCGAAGGTCTCCCAAATTGCGACTCGGTTCAACGTAAGCGTTTGGGAGATCTTGGCGACGAACTCTCTGGTCTTCTCCATAACAGCATCAAGTGCGGCACACCAAATCCTGAGAGCGAAATCACAAGTAAGAATACCAATCTGGTGTTATTGTGTGGATGGAATCCGAAGGTCAAAGTCAATCGCTTACATAGTTGAGGCAGCAGACACACTTGCGTCCATATCAGAAGGGTACGGTGGATTAGTTAGTGGTGAACAGATAAGGATTTTGAACGGCATAAATGGTACAAACCCCTTGACATGTGGAGGCAGGGTTGTGATTCCACTTCCATGCACGTGTTTTGGTAATGTAAACAATGGGGGAGCTGCTATTTACATGTCGTATGTGGTTCAAAGAAGGGAGAGGCTGGGGAGCATAGCAGCAAAGTTTGCTACAACTGTTTCCGACTTGCAAACTGTAAATGGCTTTGGGGAACCTACGGTAAATCCAGGAGACATTCTTTCTGTTCCCATTGCAGCATGTTCATCTGAAACCTTGAATTGGTACGATGAGAGAATGATAGTCCCAAATGGCTCATATACATTAACTGCCACCAACTGCATCAAATGCACTTGTGAACCAGCAGATATTACGTTGCATTGTGTTCCTTCTGGACTAGATGTCCCCTGCTATAATTTACGTTGCAAAGGATCCAATCTTACTATTGGTGATCAATTTGTGGATCATTCACAACCAGCTTGCAATGTGAGCCAATGTGTTTACCGTGGCCATAGGGGGGGCAAAATTTTTAGTAGTATGGCGAAATCTTCTTACCTCGAGTGCCCGGATAATATGTGTCATAGTGGACCATCATGTTGGTCTTCCTCGTCACCATATCCTAAAGACCCATTAGGTATGTCTACAAAGCCACCCCCCTCCTTGCCACTGCCAGTTTCTAAGGCTGCTTTCAGGACTCGTGCCTCCAATGGAAGGCTTAGTCAATTTTTAAACCATGCGCTGCAATTATTCTTGTTCAATTCTATCCTTTATTTTCTGATTTGA 1173 0.4408 MRNYVYVCLLLVVFFGLAEAKSTIEACDSSDSCLSLVSYLLPWDSKVSQIATRFNVSVWEILATNSLVFSITASSAAHQILRAKSQVRIPIWCYCVDGIRRSKSIAYIVEAADTLASISEGYGGLVSGEQIRILNGINGTNPLTCGGRVVIPLPCTCFGNVNNGGAAIYMSYVVQRRERLGSIAAKFATTVSDLQTVNGFGEPTVNPGDILSVPIAACSSETLNWYDERMIVPNGSYTLTATNCIKCTCEPADITLHCVPSGLDVPCYNLRCKGSNLTIGDQFVDHSQPACNVSQCVYRGHRGGKIFSSMAKSSYLECPDNMCHSGPSCWSSSSPYPKDPLGMSTKPPPSLPLPVSKAAFRTRASNGRLSQFLNHALQLFLFNSILYFLI 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2539 390 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 8 343 - -
Aed5g2539 390 SUPERFAMILY LysM domain 170 214 IPR036779 -
Aed5g2539 390 ProSiteProfiles LysM domain profile. 170 213 IPR018392 -
Aed5g2539 390 SMART LysM_2 106 152 IPR018392 -
Aed5g2539 390 SMART LysM_2 171 214 IPR018392 -
Aed5g2539 390 CDD LysM 171 213 IPR018392 -
Aed5g2539 390 ProSiteProfiles LysM domain profile. 105 151 IPR018392 -
Aed5g2539 390 CDD LysM 107 143 IPR018392 -
Aed5g2539 390 Pfam LysM domain 172 214 IPR018392 -
Aed5g2539 390 Pfam LysM domain 107 152 IPR018392 -
Aed5g2539 390 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 1 8 343 - -
Aed5g2539 390 Gene3D LysM domain 162 224 IPR036779 -
Aed5g2539 390 Gene3D LysM domain 99 157 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2539 Aed-Chr5 26333722 26335888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2539 1 319 LysM Receptor-like Protein (LYPs) Gene Family AT1G77630 40.308 3.68e-78 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2539 - - gmx:100819382 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2539 5 26333722 26335888 Aed5g2539 5 26333722 26335888 ECH