Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1287 ATGGCATTCCTCAAACAAGCACTTTCATCCCTATTACTATTCCCTCTATTACTGCTCATTTCCCTCTTCAAACCCTCCCACGCCGGAGGAATAGCCACCTATTGGGGTCAAAACGGCGGCGAAGGCTCATTGGCCGACGCATGCAACACCGGCAATTACCAATTCGTGAACATAGCATTCCTGTCCACATTCGGCAACGGCCAAACCCCGCAACTAAACCTCGCCGGCCACTGCGACACCAGAATCTCCACCAGCTGCACCAAGTTCAGCGACCAAATCAAGGCGTGCCAAGGCAGAGGCATCAAAGTGCTCCTCTCCCTCGGCGGCGCCAGCGGGAGCTACTCGCTCGCCTCTGCCGCAGAAGCAACCCAGCTTGCCAACTTCCTCTGGAACAACTTCCTTGGCGGGACGGGGAGTTCGTCCCGTCCTCTAGGCCCCGCCGTCCTCGATGGCGTGGACTTTGACATTGAGGCCGGCGGGGGAGCCCACTGGGACGAACTTGCGAGAGCTCTGCGAGGCTTCCCCTCGCAGAAGAAGGTCTACTTGTCCGCAGCCCCGCAGTGTCCATTCCCCGACGCTCACTTGGACTCGGCCATCAAAACCGGGCTCTTTGACTACGTGTGGGTTCAGTTCTACAACAACCCTCTCGCTGCGTGCCAGTACTCGAGCGGAAACACCAGAGATCTCATCAATTCTTGGAACCGATGGACCTCGAGCCAGGCCAAGCAAGTGTTTTTGGGGCTGCCGGCTTCTACTGCAGCTGCTAGTAATGGGTTTATTCCTGTTGACGTGTTGACCTCTCAGATTCTTCCTTCCATCAAAGGCTCTTCCAAGTATGGTGGAGTCATGCTTTGGAACAGATTCAATGATGTTCAAAGCGGATACAGTGGTGCTATTAAGGCTAGTGTTTAA 912 0.5526 MAFLKQALSSLLLFPLLLLISLFKPSHAGGIATYWGQNGGEGSLADACNTGNYQFVNIAFLSTFGNGQTPQLNLAGHCDTRISTSCTKFSDQIKACQGRGIKVLLSLGGASGSYSLASAAEATQLANFLWNNFLGGTGSSSRPLGPAVLDGVDFDIEAGGGAHWDELARALRGFPSQKKVYLSAAPQCPFPDAHLDSAIKTGLFDYVWVQFYNNPLAACQYSSGNTRDLINSWNRWTSSQAKQVFLGLPASTAAASNGFIPVDVLTSQILPSIKGSSKYGGVMLWNRFNDVQSGYSGAIKASV 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1287 303 PANTHER ENDOCHITINASE 13 303 - -
Aed5g1287 303 PANTHER ACIDIC ENDOCHITINASE 13 303 - -
Aed5g1287 303 Gene3D Glycosidases 29 303 - -
Aed5g1287 303 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 29 303 IPR001223 GO:0005975
Aed5g1287 303 SUPERFAMILY (Trans)glycosidases 25 299 IPR017853 -
Aed5g1287 303 Pfam Glycosyl hydrolases family 18 31 274 IPR001223 GO:0005975
Aed5g1287 303 CDD GH18_hevamine_XipI_class_III 29 301 IPR045321 -
Aed5g1287 303 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 149 157 IPR001579 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1287 Aed-Chr5 12306121 12307032 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1287 11 303 Glycoside Hydrolase AT5G24090 60.269 2.78e-124 355