Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1286 ATGGCATCCCTCAAAGAAGTTTCATCCCTATTAGTAGTATTCCCTCTATTATTACTCATTTCCCTCTTCAAACCCTCCCACGCCGGAGGAATAGCCATCTATTGGGGTCAAAACGGCGGCGAAGGCTCATTGGCCGACGCATGCAACACCGGCAACTACCAATTCGTGAACATAGCATTCCTGTCCACATTCGGCAACGGCCAAACCCCGCAACTAAACCTCGCCGGCCACTGCGACCCCAGCAGCAACGGCTGCACCAAATTCAGCGACGAAATCAAGACTTGCCAGGGCAAAGGCATCAAAGTGCTCCTCTCCCTGGGAGGTGCGAGCGGGAGCTACTCCCTTGCCTCCGCCGAGGAAGCCACAACCCTCGCCAACTTCCTCTGGAACAACTTCCTCGGCGGAACGAGTTCGTCCCGCCCGCTGGGTCCTGCCATCCTCGATGGCATAGACTTCGACATCGAAGCCGGCGGAGGAGCCCACTGGGACGAACTCGCGAGAGCCCTCAACGGGTTCACTTCGGAGAAGAAGGTCTACCTGTCCGCAGCCCCACAGTGTCCAATCCCCGATGCTCACTTGGACTCAGCCATCAAAACCGGACTCTTCGACTACGTGTGGGTTCAGTTCTACAACAACCCTCCATGCCAATACTCAAGTGGCAACACAAATGATCTCATAAATTCATGGAACCAATGGACCTCAAGCCAGGCCAAGCAAGTGTTTTTGGGGCTGCCAGCTTCTACTGCAGCTGCTGGGAGTGGGTTTGTTCCTGCTGATGTGTTGACCTCACAGATTCTTCCTGCTATCAAGGGCTCTGCTAAGTATGGTGGAGTCATGCTTTGGGACCGATTCAATGATGTCCAAAGTAAATACAGTGAAGCTATTAAGGGCACTGTTTAA 900 0.5367 MASLKEVSSLLVVFPLLLLISLFKPSHAGGIAIYWGQNGGEGSLADACNTGNYQFVNIAFLSTFGNGQTPQLNLAGHCDPSSNGCTKFSDEIKTCQGKGIKVLLSLGGASGSYSLASAEEATTLANFLWNNFLGGTSSSRPLGPAILDGIDFDIEAGGGAHWDELARALNGFTSEKKVYLSAAPQCPIPDAHLDSAIKTGLFDYVWVQFYNNPPCQYSSGNTNDLINSWNQWTSSQAKQVFLGLPASTAAAGSGFVPADVLTSQILPAIKGSAKYGGVMLWDRFNDVQSKYSEAIKGTV 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1286 299 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 147 155 IPR001579 GO:0004553|GO:0005975
Aed5g1286 299 Pfam Glycosyl hydrolases family 18 31 283 IPR001223 GO:0005975
Aed5g1286 299 PANTHER ENDOCHITINASE 14 298 - -
Aed5g1286 299 Gene3D Glycosidases 29 299 - -
Aed5g1286 299 SUPERFAMILY (Trans)glycosidases 25 294 IPR017853 -
Aed5g1286 299 PANTHER ACIDIC ENDOCHITINASE 14 298 - -
Aed5g1286 299 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 29 299 IPR001223 GO:0005975
Aed5g1286 299 CDD GH18_hevamine_XipI_class_III 29 297 IPR045321 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1286 Aed-Chr5 12299850 12300749 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1286 11 299 Glycoside Hydrolase AT5G24090 60.751 8.65e-133 377