Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1279 ATGCGTGTTATCCTTGCCTCGAACCGTGGAACCGTTATGGAGCTGGGAATCACCCCCATTGTGACTTCTGGGCTGGTGATGCAACTTTTGGCTGGATCAAAGATCATTGAAGTGGACAACAATGTAAGGGAGGATCGTGCTCTCTTAAATGGTGCACAGAAGCTACTTGGCATCTTGATAGCTGTTGGTGAGGCAGTTGCATATGTTCTTTCTGGAATGTATGGTAGTGTGGGTCAACTTGGAGTGGGAAATGCCATCCTCATCATCCTCCAGCTCTGTTTTGCGGGTATTATTGTGATATGTTTGGATGAGCTCCTTCAAAAAGGGTATGGTTTGGGATCTGGAATTTCTCTTGAAAACATCATATGGAAAGCATTTAGTCCCACAACCATTAACAGTGGACGTGGAGCTGAATTTGAGGGTGCCGTCATTGCTCTGTTCCATTTGTTGATAACTAGATCAGACAAGGTTCGAGCCCTTCGGGAAGCATTTTACCGGCAAAACCTTCCCAATGTGACAAATCTGCTTGCTACTGTCTTGATCTTCCTAATTGTGATATACTTCCAAGGTTTCCGCGTGGTTTTGCCTGTGAGATCAAAGAATGCCCGTGGACAGCAGGGTTCATATCCAATCAAGTTATTTTATACCTCCAACATGCCCATTATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATTTCTCAGCTCCTACACAGGAAGTACAGTGGAAACTTCTTTGTAGATCTATTGGGCAAATGGAAGGACTCTGAATATGGAGGTGGTCACTCTGTACCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAGCTTAGCTGATATGGCAGCCAATCCTTTCCATGCACTATTCTACCTTGTGTTTATGTTGTCAGCCTGTGCCTTGTTCTCTAAAACTTGGATTGAAGTCTCTGGTTCATCTGCTAGAGATGTTGCAAAACAGCTGAAGGAACAACAAATGGTGATGCCTGGACATCGTGAGTCGAACTTGCAGAAAGAACTGAACCGATACATTCCCACTGCTGCAGCATTCGGAGGCATCTGTATCGGTGCCCTGACAGTGTTGGCCGATTTCATGGGAGCAATTGGTTCCGGGACCGGAATATTGCTTGCAGTAACAATCATCTATCAGTACTTTGAAACCTTCGAGAAGGAGAGAGCCAGCGAGCTTGGCTTCTTTGGTTTCTAA 1212 0.4521 MRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAVGEAVAYVLSGMYGSVGQLGVGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRSDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLHRKYSGNFFVDLLGKWKDSEYGGGHSVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1279 403 TIGRFAM 3a0501s007: preprotein translocase, SecY subunit 1 394 IPR002208 GO:0015031|GO:0016020
Aed5g1279 403 SUPERFAMILY Preprotein translocase SecY subunit 2 393 IPR023201 -
Aed5g1279 403 PIRSF SecY_Sec61alpha 2 398 IPR002208 GO:0015031|GO:0016020
Aed5g1279 403 Gene3D SecY subunit domain 1 402 IPR023201 -
Aed5g1279 403 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 1 403 IPR002208 GO:0015031|GO:0016020
Aed5g1279 403 Pfam SecY 11 386 IPR002208 GO:0015031|GO:0016020
Aed5g1279 403 PANTHER SECY PROTEIN TRANSPORT FAMILY PROTEIN-RELATED 1 403 - -
Aed5g1279 403 ProSitePatterns Protein secY signature 1. 11 30 IPR030659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1279 Aed-Chr5 11973505 11977738 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1279 1 403 Miscellaneous Gene Families AT2G34250 90.976 0.0 750
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1279 5 11973505 11977738 Aed5g1279 5 11973505 11977738 ECH