Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1161 ATGAGTTCTGAAGCCGAGATGAAAGTTGCAGCCCAAGGGAATGACATAGACGGTCTATACAGAGTGATTAAGCAGGATATGCATGTGTTGGAGACCATAGATTCAAAGCCATTTGATGAGACTCCTTTGCACGTTGCTGCATCATTTGGCAATTTAGAGTTTGCTACTGAGATCATGACGCTTAAACCTTCGCTTGCTCTCAAACTAGATCCAGAAGGATTCACTCCCATCCTCCTTGCTTTACAACACGACCAAAAGAAAATGGTCCTTCGCCTTGTAGAGATCAACAAAGAGCTGGTTCGAGTCAAAGGGAGGGACGGCTTCACTCCTCTGCATTTGGCAAGTCAAAAAGGAGACACTGAGATTTTGCAAAAGTTCATCAAGGCTTGTCCTGATTCCATTGAAGACGTGACTGTTAGAAATGAGACTGCACTGCATATTGCAATAGAACATGGACACTATGAGGCTTTTGAAGTCCTATATCAGTGCCTCTTGAGAAATTCCAAAGAAGATGCTGAATGTGCATTACTGAATTGGAAGGATCAAAAAGGCAACACGATTTTGCACGTTGCAGCACTCTACGATGGCATAGAGAATTACAATTTGGATTTCAATGCCGAGAATCTGGAAGGCAAAACAGCTTTAGACATAGCAAGCAACGCCCGTACCAAGAGCACATTGATGGACCGTACAGTGATTTGGAAAATTAATACGTTAATAAGATTTATAAACAAGTGGTCGAATCACCGATTTGGTCGTCTGAGACGACATATGACAGCGGAGGAACGCAACGCATATTTGGTCGTTGCGACCCTTATTGCAACAGCCACTTACCAATCAGCCCTCAGTCCCCCTGGTGGACTTTATCAACTTGATGCTGGGAATAATAATAATAATACTGTGGCGGCGTCCTCTCCTCCATCCATAAATTACGAGCCTACAGTTGGAATTGGAGGGAACTCAATCATGTCAAACGATGAGTTTGATTTGTTTTCCTTCTTCAACATATGTTCCTTTATGGTATCCACTATCTCCATTTTTATTCTATTGCCCAGGACGACTACTATGTGGCTTCTACTGTATTTGCCAACGTTCTTCCTCCAATGCAGCTACCTCATCGCTATGACGATCATATCTCCCACCAATCATACCACAATGGTTGCTTTTACCACTTTTTTTGCTTATTTGTGTGGCTTTTATCTTTGTCTTTCGATTTATAGGAGTTATCATATTATTCTAATCCGTCGTCGACCCATTTGTAGTACTCTGTCATTCTGA 1278 0.4218 MSSEAEMKVAAQGNDIDGLYRVIKQDMHVLETIDSKPFDETPLHVAASFGNLEFATEIMTLKPSLALKLDPEGFTPILLALQHDQKKMVLRLVEINKELVRVKGRDGFTPLHLASQKGDTEILQKFIKACPDSIEDVTVRNETALHIAIEHGHYEAFEVLYQCLLRNSKEDAECALLNWKDQKGNTILHVAALYDGIENYNLDFNAENLEGKTALDIASNARTKSTLMDRTVIWKINTLIRFINKWSNHRFGRLRRHMTAEERNAYLVVATLIATATYQSALSPPGGLYQLDAGNNNNNTVAASSPPSINYEPTVGIGGNSIMSNDEFDLFSFFNICSFMVSTISIFILLPRTTTMWLLLYLPTFFLQCSYLIAMTIISPTNHTTMVAFTTFFAYLCGFYLCLSIYRSYHIILIRRRPICSTLSF 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1161 425 ProSiteProfiles Ankyrin repeat region circular profile. 106 128 - -
Aed5g1161 425 PANTHER HOMEOBOX PROTEIN WARIAI 13 390 - -
Aed5g1161 425 SMART ANK_2a 106 136 IPR002110 GO:0005515
Aed5g1161 425 SMART ANK_2a 72 101 IPR002110 GO:0005515
Aed5g1161 425 SMART ANK_2a 140 171 IPR002110 GO:0005515
Aed5g1161 425 SMART ANK_2a 38 67 IPR002110 GO:0005515
Aed5g1161 425 Pfam Domain of unknown function 260 375 IPR026961 -
Aed5g1161 425 PANTHER ANKYRIN REPEAT PROTEIN 13 390 - -
Aed5g1161 425 SUPERFAMILY Ankyrin repeat 14 218 IPR036770 -
Aed5g1161 425 Gene3D - 1 231 IPR036770 -
Aed5g1161 425 ProSiteProfiles Ankyrin repeat profile. 106 128 IPR002110 GO:0005515
Aed5g1161 425 Pfam Ankyrin repeats (3 copies) 103 162 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1161 Aed-Chr5 10008313 10010438 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1161 9 303 Miscellaneous Gene Families AT4G10720 39.319 2.60e-69 223