Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1135 ATGGGGCCTCTTGAGATTTGTTCTTCAAGTTTTGTTTGGTATCTTAGTTTTGTTCTCATGATGAGTAGTTCAGTCCACGTCCAAGCTAATAGCGGTTGGCTTAACGCTCATGCAACGTTCTATGGGGCAAATCAAAATCCCACCACCCTTGGGGGAGCGTGTGGCTACGATGACACCTTCCATGCCGGGTTTGGTGTGAACACCGCAGCAGTGAGCACCATGCTGTTCAGAGACGGCGAGGTTTGTGGTGCATGCTACCAAGTGATGTGTGACTATAGGGCAGACCCTAAATGGTGCCTTATTAGCCGCAGCGTCACCGTAACCGCCACTAACTTTTGCCCTCCGAACAACCGCGGAGGGTGGTGCGACCCCCCTTACCACCACTTCGACATGTCCATGCCTGCTTTCTCTCGCATTGCTCGACAAGGCAATGAAGGCATTGTTCCCGTCCTTTATAGAAGGGTGGCATGCAAGAGAAGAGGGGGAGTGAGGTTCACACTGAAGGGGGAATCCAACTTCAACATGGTGATGATATCCAATGTTGGAGGGAGTGGGGATGTGAAGGCTGTGTGGATCAGAGGATCCAGAAGTGGGGCATGGCTCCCAATGCACAGGAATTGGGGTGCCAACTGGCAGAGCAGTGCAGATCTCAGAAGCCAGAGACTCTCATTCAAAATGACATTGGTTGATGGTGGTAAGACATTGGTGTTCCTCAATGTGGTTCCTTCCACTTGGAGCTTTGGCCAAACATTTTCATCCAGGACTCAATTCTTTTAG 777 0.5071 MGPLEICSSSFVWYLSFVLMMSSSVHVQANSGWLNAHATFYGANQNPTTLGGACGYDDTFHAGFGVNTAAVSTMLFRDGEVCGACYQVMCDYRADPKWCLISRSVTVTATNFCPPNNRGGWCDPPYHHFDMSMPAFSRIARQGNEGIVPVLYRRVACKRRGGVRFTLKGESNFNMVMISNVGGSGDVKAVWIRGSRSGAWLPMHRNWGANWQSSADLRSQRLSFKMTLVDGGKTLVFLNVVPSTWSFGQTFSSRTQFF 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1135 258 SUPERFAMILY Barwin-like endoglucanases 32 180 IPR036908 -
Aed5g1135 258 Gene3D - 18 158 IPR036908 -
Aed5g1135 258 PRINTS Expansin signature 92 103 IPR002963 GO:0009664
Aed5g1135 258 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Aed5g1135 258 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Aed5g1135 258 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Aed5g1135 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Aed5g1135 258 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Aed5g1135 258 PRINTS Expansin signature 105 115 IPR002963 GO:0009664
Aed5g1135 258 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Aed5g1135 258 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Aed5g1135 258 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Aed5g1135 258 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Aed5g1135 258 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Aed5g1135 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Aed5g1135 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 162 IPR007112 -
Aed5g1135 258 Pfam Lytic transglycolase 68 152 IPR009009 -
Aed5g1135 258 Gene3D - 162 258 IPR036749 -
Aed5g1135 258 Pfam Expansin C-terminal domain 163 242 IPR007117 -
Aed5g1135 258 PANTHER EXPANSIN-A15 9 257 IPR002963 GO:0009664
Aed5g1135 258 SUPERFAMILY PHL pollen allergen 159 253 IPR036749 -
Aed5g1135 258 SMART dpbb_1 68 152 IPR007112 -
Aed5g1135 258 PANTHER EXPANSIN-A12 9 257 - -
Aed5g1135 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 253 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1135 Aed-Chr5 9658427 9660305 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1135 14 258 Expansin Gene Family AT3G15370 60.145 4.86e-115 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1135 - - gmx:100803855 499.975