Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed5g1096 | ATGAGTACTGCAAAAAAATTGCCATTGCATTACTTCTACGCAAGATTATCAAAGCATTGCAGAGAGTTAACTACTCTTACCCTTGTGCAAACCCCACCCACTACTACTACACGCTTCGAAACATGCGGAAAAGAAAAAGAACCTTTGAACTATGGCACCCATTGGCACCCCAATCCCCAAGTTTCATGCTTTCCTCAAAAGGGATTTTCAATAATCACTGACTTCATTGTTGGGAAAGCACTGCACGCGTTATGCGTTAAGGGTGTCATCCGACTAGGCACATTCCAGGAAAACACCTTGATCAGCATGTACTCCAGGTTCGGCAGCATCGAGCACGCGCAACACGTGTTTGATAAAATGCCTGAGAGAAACGAGGCCTCTTGGAATAACATGATGTCGGGGTTTGTTCGAGTGGGGTGGTATCACGGAGCAATACAATTCTTCTGCCGCATGCTTGAGCACGGTGTGAGGCCGAGCAGTTACGCGGCTGCTAGTTTGGTTACGGCTTGTGATAGGTCGGGGTGCATGGCCGAAGGGGCGCTTCAGGTTCATGCCCATGTGATCAAATGCGGTTTGGTGTGTGATGTATTTGTTGGCACGAGTTTGCTTCACTTTTATGATAAGTGTGGTCTGGTTTCTGAGGTTGACAAGGTCTTCGAGGAGATTGAGGAACCTAATATAGTGTCATGGACTTCTTTGATGGTTAGTTATGCTTATAATAGGTGTGTAAAGGAGGTTATGAGTGTTTATCAGCATTTGAGACTCAATCTGGTGCACTGTAATGAAAATGCAATGGCCACGGTTATTAGGTCTTGTGGGGTGCTTGGGGACAAAATGTTGGGTTATCAGGTGCTTGGTAGTGTGGTCAAATCTGGATTGGATACTACTGTGTCTGTGGCAAACTCCCTTGTTTCCATGTTTGGTAATTGTGATAGCATAGAGGAGGCCTCTTGTGTGTTTGATAACATGAAGGAACGTGACACTATATCGTGGAATTCAATAATTACTGCAAGTGTACATAATGGTCATTGTGAAAAATCTCTAGAATACTTTTCTCAGATGCGTTATACACACACAGAAACAGATTATATTACTATTTCAGCCTTGCTACCAGTGTGTGGGTCTGGTCAAAATTTGAGGTGGGGAAGAGGGCTTCATGGTTTGGTAGTAAAATCTGGACTGAAATCAAATGTTTGCGTGTGCAATAGTCTTCTAAGTATGTATTCTCAGGCTGGAAAATCTGAGGATGCAGAGTGTGTATTTCATACAATGCCAGAGAGAGATTTAATTTCGTGGAATTCCATTATGGCAAGCCATGTTGAGAATGGAAAGTATCCACATGCCATAGAACTTTTGATTGAGATGCTCCAAACAAGAAAGGCGACAAACTATGTAACTTTTACTACTGCATTATCTGCTTGTTATAATTTAGAAAAATTAAAGATGGTTCATGCCTTTGTGATTCTTCTTGGTCTCCATCAGAATTTGATCATAGGTAATGCATTGGTTACCATGTATGGGAAATTTGGTTCCATGGTTGCAGCACAACAGGTATGCAAAATTATGCCCGAGAGAGATGAGGTAACTTGGAATGCACTAATAGGTGGACATGCTGATAACAAAGAACCTAATGCAGCAATTGAAGCCTTCAATTTGTTGAGAAAAGAAGATGTGCCTGAAAACTACATTACTATTGTTAATCTTCTCAGTGCTTGTTTGACTCCTGATAACCTTTTGAAACACGGAATGCCAATCCATGCACATATAGTTGTAGCAGGTTTTGAGTTAGATACATTTGTGCAAAGCTCCCTAATTACAATGTATGCCCAGTGTGGTAATCTTAACACAAGTAACTATATTTTCAACGTATTAGCTGATAAGAATTCTAGTACTTGGAATGCCATTCTTTCTGCAAATGCTCATTATGGACCTGGTGAGGAGGCACTAAAGCTTATAATAAAGATGAAGAATGATGGGGTTCATTTAGATCAGTTTAGCTTCTCTGTAGCTCTTGCCATTATCGGTAACTTAACCCTACTGGATGAAGGTCAGCAGCTTCATAGCTTGATTATTAAACATGGGTTTGAGTCGAATGATTATGTTTTAAATGCAACAATGGATATGTATGGGAAATGTGGGGAAATCGATGATGTGTTTAGAATCCTTCCCCAACCAAGAAGCAGGTCACAGAGGTCTTGGAACATTTTAATATCAGCATTAGCCAGGCATGGTTTGTTCCAACAAGCTAGGGAAGCCTTTCATGGGATGCTTGATCTTGGACTGAGACCAGACCATGTCACTTTTGTTTCACTTTTGTCTGCATGCAGCCATGGGGGTTTGGTGGACGAGGGTCTTGCATACTTCTCTTCAATGTCTACCAAATTCAGTGTCCCCATTGGAATAGAGCATTGTGTATGCATAATTGATCTTCTTGGGAGAGCAGGAAGGCTTGCTGAGGCTGAAAATTTCATTAGTAAGATGCCAGTTCCACCAACTGACCTCGTGTGGCGTAGCCTGTTGGCTTCTTGTAAAACACATGGCAATTTGGAGCTTGCGAGGAAAGCTGCCGATCGTCTTTTCGAGCTGGATTCATCTGACGATTCAGCCTATGTTCTTTATTCAAATGTCTGTGCATCAACCAGAAGGTGGAGAGATGTGGAGAATGTGAGAAAGCAAATGGAATCACACAACATAAAGAAGCAACCTGCCTGTAGTTGGATCAAGTTGAAAAACCAGGTTACTACTTTTGGAATGGGAGACCAGTATCATCCACAAAACGCAGAAATCTATGCGAAGTTGGAAGAGCTCAAAAAGATGATTAGAGAGGCAGGCTATGTGCCTGACACAAGCTGTTCATTGCAAGATACAGATGAAGAACAAAAAGAGCATAACCTTTGGAACCATAGTGAGAGAATTGCTCTTGCATTTGGGTTGATCACTAGTTCAGAAGGTTCACCTCTAAGAATTTTTAAGAATATCCGTGTCTGTGGTGATTGCCACTCTGTTTTCAAGATGTGTATTGTAAACAAATTAACCACGATATCATTTCCTAAGACAGAACTACCAATCCATTCTCCATTGTTGTTTCTACATTTCACACCAACACTTTAA | 3111 | 0.415 | MSTAKKLPLHYFYARLSKHCRELTTLTLVQTPPTTTTRFETCGKEKEPLNYGTHWHPNPQVSCFPQKGFSIITDFIVGKALHALCVKGVIRLGTFQENTLISMYSRFGSIEHAQHVFDKMPERNEASWNNMMSGFVRVGWYHGAIQFFCRMLEHGVRPSSYAAASLVTACDRSGCMAEGALQVHAHVIKCGLVCDVFVGTSLLHFYDKCGLVSEVDKVFEEIEEPNIVSWTSLMVSYAYNRCVKEVMSVYQHLRLNLVHCNENAMATVIRSCGVLGDKMLGYQVLGSVVKSGLDTTVSVANSLVSMFGNCDSIEEASCVFDNMKERDTISWNSIITASVHNGHCEKSLEYFSQMRYTHTETDYITISALLPVCGSGQNLRWGRGLHGLVVKSGLKSNVCVCNSLLSMYSQAGKSEDAECVFHTMPERDLISWNSIMASHVENGKYPHAIELLIEMLQTRKATNYVTFTTALSACYNLEKLKMVHAFVILLGLHQNLIIGNALVTMYGKFGSMVAAQQVCKIMPERDEVTWNALIGGHADNKEPNAAIEAFNLLRKEDVPENYITIVNLLSACLTPDNLLKHGMPIHAHIVVAGFELDTFVQSSLITMYAQCGNLNTSNYIFNVLADKNSSTWNAILSANAHYGPGEEALKLIIKMKNDGVHLDQFSFSVALAIIGNLTLLDEGQQLHSLIIKHGFESNDYVLNATMDMYGKCGEIDDVFRILPQPRSRSQRSWNILISALARHGLFQQAREAFHGMLDLGLRPDHVTFVSLLSACSHGGLVDEGLAYFSSMSTKFSVPIGIEHCVCIIDLLGRAGRLAEAENFISKMPVPPTDLVWRSLLASCKTHGNLELARKAADRLFELDSSDDSAYVLYSNVCASTRRWRDVENVRKQMESHNIKKQPACSWIKLKNQVTTFGMGDQYHPQNAEIYAKLEELKKMIREAGYVPDTSCSLQDTDEEQKEHNLWNHSERIALAFGLITSSEGSPLRIFKNIRVCGDCHSVFKMCIVNKLTTISFPKTELPIHSPLLFLHFTPTL | 1036 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed5g1096 | 1036 | Pfam | PPR repeat family | 732 | 776 | IPR002885 | - | |
| Aed5g1096 | 1036 | Gene3D | Tetratricopeptide repeat domain | 89 | 176 | IPR011990 | GO:0005515 | |
| Aed5g1096 | 1036 | Gene3D | Tetratricopeptide repeat domain | 387 | 486 | IPR011990 | GO:0005515 | |
| Aed5g1096 | 1036 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 729 | 763 | IPR002885 | - | |
| Aed5g1096 | 1036 | Pfam | Pentatricopeptide repeat domain | 390 | 436 | IPR002885 | - | |
| Aed5g1096 | 1036 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 526 | 560 | IPR002885 | - | |
| Aed5g1096 | 1036 | PANTHER | - | 181 | 374 | - | - | |
| Aed5g1096 | 1036 | PANTHER | - | 359 | 572 | - | - | |
| Aed5g1096 | 1036 | PANTHER | - | 578 | 908 | - | - | |
| Aed5g1096 | 1036 | PANTHER | - | 241 | 475 | - | - | |
| Aed5g1096 | 1036 | PANTHER | - | 476 | 671 | - | - | |
| Aed5g1096 | 1036 | PANTHER | - | 73 | 276 | - | - | |
| Aed5g1096 | 1036 | Pfam | E motif | 846 | 908 | IPR046848 | - | |
| Aed5g1096 | 1036 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 397 | 431 | IPR002885 | - | |
| Aed5g1096 | 1036 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 124 | 158 | IPR002885 | - | |
| Aed5g1096 | 1036 | SUPERFAMILY | TPR-like | 689 | 867 | IPR011990 | GO:0005515 | |
| Aed5g1096 | 1036 | Pfam | DYW family of nucleic acid deaminases | 944 | 1006 | IPR032867 | GO:0008270 | |
| Aed5g1096 | 1036 | Gene3D | Tetratricopeptide repeat domain | 487 | 576 | IPR011990 | GO:0005515 | |
| Aed5g1096 | 1036 | Gene3D | Tetratricopeptide repeat domain | 285 | 386 | IPR011990 | GO:0005515 | |
| Aed5g1096 | 1036 | Gene3D | Tetratricopeptide repeat domain | 177 | 284 | IPR011990 | GO:0005515 | |
| Aed5g1096 | 1036 | Gene3D | Tetratricopeptide repeat domain | 729 | 928 | IPR011990 | GO:0005515 | |
| Aed5g1096 | 1036 | Gene3D | Tetratricopeptide repeat domain | 577 | 728 | IPR011990 | GO:0005515 | |
| Aed5g1096 | 1036 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 764 | 798 | IPR002885 | - | |
| Aed5g1096 | 1036 | Pfam | PPR repeat | 329 | 355 | IPR002885 | - | |
| Aed5g1096 | 1036 | Pfam | PPR repeat | 301 | 326 | IPR002885 | - | |
| Aed5g1096 | 1036 | Pfam | PPR repeat | 127 | 156 | IPR002885 | - | |
| Aed5g1096 | 1036 | Pfam | PPR repeat | 98 | 124 | IPR002885 | - | |
| Aed5g1096 | 1036 | Pfam | PPR repeat | 528 | 557 | IPR002885 | - | |
| Aed5g1096 | 1036 | Pfam | PPR repeat | 630 | 660 | IPR002885 | - | |
| Aed5g1096 | 1036 | Pfam | PPR repeat | 228 | 253 | IPR002885 | - | |
| Aed5g1096 | 1036 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 628 | 662 | IPR002885 | - | |
| Aed5g1096 | 1036 | TIGRFAM | PPR: pentatricopeptide repeat domain | 127 | 159 | IPR002885 | - | |
| Aed5g1096 | 1036 | TIGRFAM | PPR: pentatricopeptide repeat domain | 400 | 428 | IPR002885 | - | |
| Aed5g1096 | 1036 | TIGRFAM | PPR: pentatricopeptide repeat domain | 732 | 764 | IPR002885 | - | |
| Aed5g1096 | 1036 | TIGRFAM | PPR: pentatricopeptide repeat domain | 528 | 558 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed5g1096 | Aed-Chr5 | 9284629 | 9288115 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed5g1096 | 362 | 847 | Glycoside Hydrolase | AT3G49170 | 26.693 | 5.22e-44 | 171 |