Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0942 ATGGCTACACGGAAACTTGAAAAGATGGCTTCAATTGATGCTCAGTTGAGGTTGCTGGCACCAAGTAAGGTTTCTGATGATGACAAACTTGTTGAGTATGATGCTTTGTTGCTGGACCGTTTCCTTGACATTCTTCAGGATTTGCATGGCGATGCTATTAGAGAAACGGCAAGTGTTCAAGACTGTTATGAGCTGTCTGCTGAGTATGAAGGGCAGAATAACCCTCAGAAGTTGGAGGAACTTGGGAACATGCTAACTGGTCTTGATGCTGGGGATTCTATTGTGATTTCGAAGTCGTTTGCTCATATGCTTAATTTGGCCAATTTGGCAGAAGAAGTTCAGATTGCATACCGTAGAAGGATTAAGTTATTGAAGAAGGGTGATTTTGCTGACGAGAATTCTGCTATCACCGAGTCAGATATTGAAGAGACTTTCAAGAGGCTTGTGAATCAGCTGAAGAAGACTCCTCAAGAAGTCTTTGATGCTTTGAAGAGCCAAACTGTAGATTTGGTCTTTACCGCTCATCCTACTCAATCTGTTCGTAGATCTTTGCTGCAAAAGCATGGCAGGGTAAGGAATTGTTTGACACAGTTGTATGCTAAAGACATAACACCAGATGATAAACAAGAGCTTGATGAGGCTTTACAAAGAGAGATTCAAGCTGCATTTCGTACGGATGAAATTCGAAGGACCCCTCCTACACCACAAGATGAGATGAGAGCAGGAATGAGCTACTTTCATGAGACGATCTGGAAAGGTGTACCAAAGTTTTTGCGTAGGGTTGACACAGCTCTGAAGAACATTGGCATAAATGAACGTGTTCCATATAATGCCCCTGTTATTCAATTCTCTTCTTGGATGGGAGGAGATCGTGATGGTAACCCCAGGGTAACTCCAGAAGTTACAAGGGATGTGTGTTTGCTGGCCAGAATGATGGCTGCTAATTTGTACTTCTCTCAGATTGAGGATCTCATGTTTGAGTTGTCTATGTGGCGCTGCAATGACGAGCTACGTGTTCGTTCTGATGAACTCCTTAGCTCCTCAAAGAGAGATGCAAAGCATTATATTGAGTTTTGGAAACAGATTCCTCCCAATGAGCCATATCGTGTTATTCTTGGTGATGTAAGGGACAAATTATATAATACACGTGAACGTTCTCGGCAGTTGTTAGCCAATGGAAGCTCTGAAATCCCTGAAGAGACTACCTTCACAAATGTTGAACAGTTCCTGGAGCCTCTTGAATTGTGTTATAGGTCACTGTGTGCATGTGGTGACCAACCAATAGCTGATGGAAGCCTTCTTGATTTCTTGCGCCAAGTTTCCACATTTGGGCTTTCACTTGTAAGACTTGATATCCGTCAAGAATCAGATCGGCACACTGATGTTATGGATGCTATTACAAACCACTTGGAGATTGGATCTTACCGAGAATGGTCTGAGGAACGCAGGCAGGAATGGCTGCTATCTGAGCTCAGTGGAAAGCGCCCTCTCTTCGGCCCTGATCTTCCTAAAACAGAAGAAATTGCTGATGTATTGGAAACCTTCCATGTCATTGCGGAACTTCCTTCAGACAGCTTTGGTGCCTATATCATCTCAATGGCAACATCCCCATCTGATGTGCTTGCTGTAGAACTCTTACAACGTGAATGCCATGTGAAGCAACCATTAAGGGTTGTTCCATTGTTTGAAAAGCTTGCTGATCTTGAGGCTGCTCCTGCTGCAGTAGCCTGCCTATTCTCTATAGATTGGTATAGAGACCGTATCAATGGAAAACAAGAAGTTATGATAGGGTACTCAGACTCGGGAAAAGATGCTGGTCGTCTCTCTGCGGCTTGGGCACTGTACAAGGCTCAAGAAGAGCTCATAAAGGTTGCGAAAGAGTTTGGTGTTAAGCTTACAATGTTCCATGGCAGAGGAGGGACTGTGGGAAGAGGAGGAGGTCCCACTCATCTTGCTATATTGTCTCAGCCACCGGACACTATTCATGGCTCGCTTCGGGTAACAGTGCAAGGTGAAGTTATTGAACAGTCATTTGGAGAGGAGCACTTGTGCTTCAGAACACTTCAGCGCTTCACTGCTGCTACACTTGAGCATGGAATGCACCCTCCTGTGGCACCAAAACCAGAATGGCGTGCCCTCTTGGATGAGATGGCTGTTGTGGCTACAGAGGAGTATCGCTCCGTTGTTTTCCAGGAACCCCGTTTTGTTGAGTACTTCCGATGTGCCACTCCTGAGTTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCATCAAAACGAAAGCCAAGTGGAGGAATCGAATCACTCCGTGCAATCCCTTGGATCTTTGCTTGGACTCAGACAAGGTTTCATCTGCCTGTATGGCTTGGATTTGGGGCGGCATTTAGGCATATAATTAAAAAGGATCCAAAGAATCTCCCAATGCTTCAAGATATGTATAACCAATGGCCTTTCTTCAGGGTCTCCCTTGACTTGGTTGAAATGGTGTTTGCCAAGGGAGATCCCGGGATTGCGACCCTTTATGACAAACTCCTAGTGTCAGAGGAACTGTGGCCATTTGGTGAGCGATTAAGGTCTATGTATGAAGAAACCAAGAGCCTTCTCCTCCTGGTTGCTGGACACAGAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGACTTTGTCTTCGCGACTCATACATCACAACCCTCAATGTCTTGCAAGCCTACACATTGAAGCGAATCCGCGATCCCGACTACCATGTGAACTTGAGGCCACATTTGTCCAAAGAATTCATAGAATCAAGCAACCCAGCCGCTGAGCTTGTGAAACTCAACCCTACAAGTGACTATGCTCCTGGTCTGGAGGATACCCTTATTTTGACAATGAAGGGTATAGCTGCTGGCATGCAAAACACTGGTTAA 2907 0.4513 MATRKLEKMASIDAQLRLLAPSKVSDDDKLVEYDALLLDRFLDILQDLHGDAIRETASVQDCYELSAEYEGQNNPQKLEELGNMLTGLDAGDSIVISKSFAHMLNLANLAEEVQIAYRRRIKLLKKGDFADENSAITESDIEETFKRLVNQLKKTPQEVFDALKSQTVDLVFTAHPTQSVRRSLLQKHGRVRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPVIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYFSQIEDLMFELSMWRCNDELRVRSDELLSSSKRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERSRQLLANGSSEIPEETTFTNVEQFLEPLELCYRSLCACGDQPIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVMDAITNHLEIGSYREWSEERRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFHVIAELPSDSFGAYIISMATSPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAAVACLFSIDWYRDRINGKQEVMIGYSDSGKDAGRLSAAWALYKAQEELIKVAKEFGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMHPPVAPKPEWRALLDEMAVVATEEYRSVVFQEPRFVEYFRCATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFRHIIKKDPKNLPMLQDMYNQWPFFRVSLDLVEMVFAKGDPGIATLYDKLLVSEELWPFGERLRSMYEETKSLLLLVAGHRDLLEGDPYLKQRLCLRDSYITTLNVLQAYTLKRIRDPDYHVNLRPHLSKEFIESSNPAAELVKLNPTSDYAPGLEDTLILTMKGIAAGMQNTG 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0942 968 PRINTS Phosphoenolpyruvate carboxylase signature 283 298 IPR021135 GO:0006099|GO:0008964|GO:0015977
Aed5g0942 968 PRINTS Phosphoenolpyruvate carboxylase signature 634 663 IPR021135 GO:0006099|GO:0008964|GO:0015977
Aed5g0942 968 PRINTS Phosphoenolpyruvate carboxylase signature 223 239 IPR021135 GO:0006099|GO:0008964|GO:0015977
Aed5g0942 968 PRINTS Phosphoenolpyruvate carboxylase signature 443 463 IPR021135 GO:0006099|GO:0008964|GO:0015977
Aed5g0942 968 PRINTS Phosphoenolpyruvate carboxylase signature 592 612 IPR021135 GO:0006099|GO:0008964|GO:0015977
Aed5g0942 968 PRINTS Phosphoenolpyruvate carboxylase signature 170 183 IPR021135 GO:0006099|GO:0008964|GO:0015977
Aed5g0942 968 PRINTS Phosphoenolpyruvate carboxylase signature 766 792 IPR021135 GO:0006099|GO:0008964|GO:0015977
Aed5g0942 968 Gene3D Phosphoenolpyruvate/pyruvate domain 311 446 - -
Aed5g0942 968 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 1 968 IPR021135 GO:0006099|GO:0008964|GO:0015977
Aed5g0942 968 Pfam Phosphoenolpyruvate carboxylase 36 968 IPR021135 GO:0006099|GO:0008964|GO:0015977
Aed5g0942 968 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 33 968 IPR015813 GO:0003824
Aed5g0942 968 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 171 182 IPR018129 -
Aed5g0942 968 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 1 968 - -
Aed5g0942 968 Hamap Phosphoenolpyruvate carboxylase [ppc]. 24 968 IPR022805 GO:0006099|GO:0008964|GO:0015977
Aed5g0942 968 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 594 606 IPR033129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0942 Aed-Chr5 7286450 7294280 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0942 5 7286450 7294280 Aed5g0942 5 7286450 7294280 ECH
Aed1g0755 1 8574827 8580904 Aed5g0942 5 7286450 7294280 PCT