Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0474 ATGGATCCTTCCAGTGGACAACACCAGCAAATGTCTAGCCAGTCATTGGAGAACATGTTGGCATGTTCAAAAGCACAGCAGCAAGATCAGAGGAAGCCAAGGCCACAGCCAGAACAAGCACTAAAGTGCCCAAGATGTGACTCCACCAACACCAAATTCTGCTACTACAACAACTACAGCCTTTCCCAGCCAAGGTACTTCTGCAAGTCATGCAGGAGATATTGGACCAAAGGAGGAACACTGAGGAATGTTCCAGTGGGAGGAGGGTGCAGGAAGAACAAGAGGTCATCATCATCATCATCATCAAAGAGAGTTCAAGACCAAGGAGGATTCTCACCCATTAATCCCAACATCAATGGCCTCCCTTCATTGTCCTATGACTCAAACGACCTCACTCTTGCATTGGCAAGGCTTCAGAAGCAGTCATTGGGCTATGATCATGATCATGAACATGATCTTTCAATGATGGGGAACCACACAAGCATGAGCATGCACCACTCATCCACAAATCCAGGGTTCTTGGATGCTCTCAGAACTGGGTTCCTTGGACCTCAAAGTACTAATATGCATAATAATAATAATATGTACTATGGATATGGGAATGGGGACATGGGGGAGGTGGACAATGGCAATGGCAATGGAGAGATGATGATGCCTTATAGTGATCAAGAAATGAGTGTTCCCTCCACACAGGCTGTGACAGTCACCACCATGAAACAAGAGCTTTGCAATGGAAGGGAACAAAGTGATCAGGGAAGGGTGTTATGGGGTTTTCCATGGCAACTCAATGGAGACACAAACATGGCTGAACTTGACTCAGGAAGAGCTAGTTGGAATGGTATCAATTCTTCATCATGGCATGGACTTCTCAACAGTCCCCTAATGTAG 888 0.4595 MDPSSGQHQQMSSQSLENMLACSKAQQQDQRKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSSKRVQDQGGFSPINPNINGLPSLSYDSNDLTLALARLQKQSLGYDHDHEHDLSMMGNHTSMSMHHSSTNPGFLDALRTGFLGPQSTNMHNNNNMYYGYGNGDMGEVDNGNGNGEMMMPYSDQEMSVPSTQAVTVTTMKQELCNGREQSDQGRVLWGFPWQLNGDTNMAELDSGRASWNGINSSSWHGLLNSPLM 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0474 295 ProSiteProfiles Zinc finger Dof-type profile. 41 95 IPR003851 GO:0003677|GO:0006355
Aed5g0474 295 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 294 IPR045174 GO:0003700|GO:0006355
Aed5g0474 295 MobiDBLite consensus disorder prediction 1 42 - -
Aed5g0474 295 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 7 294 - -
Aed5g0474 295 Pfam Dof domain, zinc finger 39 95 IPR003851 GO:0003677|GO:0006355
Aed5g0474 295 MobiDBLite consensus disorder prediction 85 116 - -
Aed5g0474 295 ProSitePatterns Zinc finger Dof-type signature. 43 79 IPR003851 GO:0003677|GO:0006355
Aed5g0474 295 MobiDBLite consensus disorder prediction 1 34 - -
Aed5g0474 295 MobiDBLite consensus disorder prediction 92 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0474 Aed-Chr5 3449897 3452904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0474 1 295 C2C2-Dof Transcription Factor Family AT2G28510 41.905 8.51e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aed5g0474 zf-Dof 6e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0474 - - gmx:100799737 436.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0474 5 3449897 3452904 Aed5g0474 5 3449897 3452904 ECH
Aed1g1155 1 11261063 11262822 Aed5g0474 5 3449897 3452904 PCT