Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0405 ATGGTTTTCTCCTCTATTCCAGTCTTTGTAGATCCTCCCAATTGGCACCAGATTCCACCACCTGAACCAGCTCTAAAGTGTCCACGTTGTGATTCCACCAACACTAAATTCTGCTATTTCAACAACTATAGCCTCTCTCAGCCACGCCACTTCTGCAAGACTTGTAGACGTTATTGGACTAAAGGGGGTGCTCTTAGAAACGTTCCTGTGGGTGGGGGGTGCCGTAGGAACAAGAAGAACAAAAGGAGTAGTAGTCGCTCCAAGTCTCCAACATCATCGGAGAAACAAACACTGTCGGGTTCCACAAGTAGTGGAATCCCCTCTGCTGCTGGAACCACTAGTGCTACTCATCATGAACTAATTGGCCAGTTGCCACAGCAACCGAACCTTCCCTTCATGGCTTCTCTTCAGAACCTTAACCGTTATGCTGTTGGAAACATGGGTCTCGGGTTGCGTGAGAATATTCACGGACAAAACGAGCACATGGGGTTTCAGATTGATGTTAATTCTTCTGGAATGGATCAGTGGCGCTTGCAGCAGGTTTCTTTCTTGAATGGTTTTGATCATCAATCAAATTCAGCTGGTAATTCATACCCTTTTCAAAATGATGGTATTGAAACAGGTTCTGGTTTTGGTGGTGGAGATATAGCAACGAATTCTAGGGTTTCTTCTCAGATTCCATCAGTTAAAATGGAAGAAAGTGGAGCTTTGAATTTGTCAAGATCATCACAAATGAATGTCGTCCCATCAGAAAATAACCATTACTATTCATGGACTGATATGTCAGGTCTTGCTTCTTCTTCCGCTACTCATCTCTTGTAA 822 0.4392 MVFSSIPVFVDPPNWHQIPPPEPALKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTKGGALRNVPVGGGCRRNKKNKRSSSRSKSPTSSEKQTLSGSTSSGIPSAAGTTSATHHELIGQLPQQPNLPFMASLQNLNRYAVGNMGLGLRENIHGQNEHMGFQIDVNSSGMDQWRLQQVSFLNGFDHQSNSAGNSYPFQNDGIETGSGFGGGDIATNSRVSSQIPSVKMEESGALNLSRSSQMNVVPSENNHYYSWTDMSGLASSSATHLL 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0405 273 MobiDBLite consensus disorder prediction 86 118 - -
Aed5g0405 273 Pfam Dof domain, zinc finger 24 79 IPR003851 GO:0003677|GO:0006355
Aed5g0405 273 ProSiteProfiles Zinc finger Dof-type profile. 25 79 IPR003851 GO:0003677|GO:0006355
Aed5g0405 273 ProSitePatterns Zinc finger Dof-type signature. 27 63 IPR003851 GO:0003677|GO:0006355
Aed5g0405 273 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 270 IPR045174 GO:0003700|GO:0006355
Aed5g0405 273 MobiDBLite consensus disorder prediction 69 118 - -
Aed5g0405 273 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 16 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0405 Aed-Chr5 2874613 2876597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0405 17 272 C2C2-Dof Transcription Factor Family AT3G55370 39.649 6.22e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aed5g0405 zf-Dof 9.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0405 - - gmx:100816635 386.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0405 5 2874613 2876597 Aed5g0405 5 2874613 2876597 ECH
Aed1g1212 1 11691854 11694220 Aed5g0405 5 2874613 2876597 PCT