Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0358 ATGAAAATTCAGTGTGATGTGTGTGAGAAAGCCCCGGCAACTGTGATTTGTTGTGCTGATGAGGCAGCTTTGTGTGCCAAATGTGACGTTGAAGTTCATGCTGCAAACAAGCTTGCAAGCAAGCACCAGAGGCTTCTCCTTCAATGTTTGTCAAACAAGCTTCCCAGATGTGACATATGTCAAGATAAGCCAGCATTCATATTTTGTGTTGAGGACAGAGCACTCTTCTGTAAAGACTGTGATGAACCGATTCATTTATCCGGTAGCCTTTCTGCAAACCACCAGCGGTTCCTTGCTACAGGTATCAGGGTGGCTTTGAGTTCTAACTGCACCAAAGGCAATGAAAAAGGTCACGTGGAACCATCTAATCCAAATGCACAACAAGTTCCTGAGAAAACTCCTTCTCAGCAAGTGCCTAGCTTCACATCCTCTTGGGCAGTTGATGACTTGTTGGAATTAACAGAGTTTGAATCACCAGACAAAGTTCAGAAGCAATCCCTGGAGTTTGGAGAGCTTGAATGGCTAGCAGATGTGGGACTTTTCAGTGAACAATTTCCTCATGAAGCATTAGCCGCGGCTGAAGTTCCTCAGCTTCCAGTGACACACACTAGCAGTGTTGCCTCACACAAAGCCTCCAAATCCTTGATGTCTTACAAAAAGCCTAGGATTGAAGTCTTAGTTGAAGATGATGATGATGATGATGAGCACTTCACTGTACCTGATCTTGGCTAA 732 0.4454 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKPAFIFCVEDRALFCKDCDEPIHLSGSLSANHQRFLATGIRVALSSNCTKGNEKGHVEPSNPNAQQVPEKTPSQQVPSFTSSWAVDDLLELTEFESPDKVQKQSLEFGELEWLADVGLFSEQFPHEALAAAEVPQLPVTHTSSVASHKASKSLMSYKKPRIEVLVEDDDDDDEHFTVPDLG 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0358 243 CDD Bbox1_BBX-like 57 98 - -
Aed5g0358 243 Gene3D Classic Zinc Finger 1 92 - -
Aed5g0358 243 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Aed5g0358 243 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 243 - -
Aed5g0358 243 Pfam B-box zinc finger 52 94 IPR000315 GO:0008270
Aed5g0358 243 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Aed5g0358 243 SMART bboxneu5 52 99 IPR000315 GO:0008270
Aed5g0358 243 SMART bboxneu5 4 47 IPR000315 GO:0008270
Aed5g0358 243 CDD Bbox1_BBX-like 5 47 - -
Aed5g0358 243 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Aed5g0358 243 MobiDBLite consensus disorder prediction 113 139 - -
Aed5g0358 243 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0358 Aed-Chr5 2510360 2513698 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Aed5g0358 zf-B_box 2.2e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0358 5 2510360 2513698 Aed5g0358 5 2510360 2513698 ECH
Aed5g0358 5 2510360 2513698 Aed11g1234 11 17528833 17531821 ECH