Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2409 ATGAACCCTGTTGATTGGGAACAAGAACTGAAAAAGTATGAGGATGTTATAGCCTCAGGTACTAATGGTATGAAAATAAAGGCCATGGTAATGCTGGCACGTTTCTCTAAGCATGCCCCTGAGCCTGTTTTAGCTCGCACCATACCCATCCTCTCTGAGATTCTTGGTCATAATGTTTCAAATGATTCTGCCCCTTCACTTCAAGAGGCTGCTGCTTATTGCTTGAAGTGCATTGCTTGCAGGGGTGATGGTGAGCTGGCTGTTGAAATTGGAGGACATGGTGCCACTCATTCTTTGATGAGGTTGTTGCCTCACTCTGATGTGAGGATGCAGAAGGTTCTGATAAAATGTTTGCTGGTTGTTGTTAGTTTTTGCAATGGTAATAGGACAGTTGTTGCCACCAATGGTAGGGTTGAAATGATCATTAGTTTGTTGAGTTCTTGCACCAACGATACCAGGCGGTATTTGTTGGAGATTTTGAGTGTGTTGGCGTTGAGGAGAGATGTTAGGAAGGCACTCACTAGACTAAGAGCTCTTCATTATGTTGTGGAGGCTGCTGGTTTTGGGAGCATGATGTCTAGGGAAAGGGCTTGTCAAGCAATTGGGTTGCTTGGAGTCACGAGACAGGCTAGGCGCACACTTGTTGAATTGGGAGTGATACCCGTGCTTGTGGCGTTATTTCGAGAAGGAGATCAAACCACCAAGCTTGTAGCTGGTAATTCTCTTGGTGTGATATCTGCTCATGTTGATTACATTAGGCTGGTGGCTCAAGCTGGGGCTATCCCCCTATATGCTGAGCTTCTTGAAGGACCTGATCCTTCTGGGAAGGAGATAGCTGAGGATGTGTTTTGCATATTGGCTGTTGCTGAGGACAATGCTGTTGAAATTGCTGGGCACCTGGTGAGGATTCTGAGAGAAGGTGATGATGAAGCAAAGGCTTCTGCGGCTGATGTGATGTGGGATCTGTCGGGTTACAAGCACACAATGTCAGTGGTCCGGGATTCGGGTGCGATTCCTATTCTTGTTGAGCTTTTGGGGAGTGGAAGTGAGGATGTGAAGGTGAATGTTTCTGGGGCATTTGCTCAACTGAGCTATGATGGAACGGATAGAATGGCACTTGCTGAGGCAGGGGCAATCCCAATTCTCATTGACTTGATGAATGATGTTGATGAGGTTGAGGAACTAAGGGATAATGCTGCAGAGGCTCTTGTCAATTATTATGTTGATCCATTGTATCATGATAGAGTGTCTGATGCGATTAATGTTCCTTTCAGAAATATGCAGAATAGACTAATTGATATTCGTGCATCGAACGAGCACATGGCTAGATCCTTGAGAAGAATGAGTGTTGAGCAGCTCACTTGGAACCCAGGTCTTGAATAA 1383 0.4548 MNPVDWEQELKKYEDVIASGTNGMKIKAMVMLARFSKHAPEPVLARTIPILSEILGHNVSNDSAPSLQEAAAYCLKCIACRGDGELAVEIGGHGATHSLMRLLPHSDVRMQKVLIKCLLVVVSFCNGNRTVVATNGRVEMIISLLSSCTNDTRRYLLEILSVLALRRDVRKALTRLRALHYVVEAAGFGSMMSRERACQAIGLLGVTRQARRTLVELGVIPVLVALFREGDQTTKLVAGNSLGVISAHVDYIRLVAQAGAIPLYAELLEGPDPSGKEIAEDVFCILAVAEDNAVEIAGHLVRILREGDDEAKASAADVMWDLSGYKHTMSVVRDSGAIPILVELLGSGSEDVKVNVSGAFAQLSYDGTDRMALAEAGAIPILIDLMNDVDEVEELRDNAAEALVNYYVDPLYHDRVSDAINVPFRNMQNRLIDIRASNEHMARSLRRMSVEQLTWNPGLE 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2409 460 Pfam Armadillo/beta-catenin-like repeat 331 364 IPR000225 GO:0005515
Aed4g2409 460 Pfam Armadillo/beta-catenin-like repeat 370 405 IPR000225 GO:0005515
Aed4g2409 460 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 10-LIKE 3 459 - -
Aed4g2409 460 SUPERFAMILY ARM repeat 47 407 IPR016024 -
Aed4g2409 460 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 336 378 IPR000225 GO:0005515
Aed4g2409 460 Coils Coil 382 402 - -
Aed4g2409 460 Gene3D - 250 420 IPR011989 -
Aed4g2409 460 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 377 405 IPR000225 GO:0005515
Aed4g2409 460 SMART arm_5 207 247 IPR000225 GO:0005515
Aed4g2409 460 SMART arm_5 125 165 IPR000225 GO:0005515
Aed4g2409 460 SMART arm_5 83 123 IPR000225 GO:0005515
Aed4g2409 460 SMART arm_5 325 365 IPR000225 GO:0005515
Aed4g2409 460 SMART arm_5 35 80 IPR000225 GO:0005515
Aed4g2409 460 SMART arm_5 366 408 IPR000225 GO:0005515
Aed4g2409 460 SMART arm_5 248 288 IPR000225 GO:0005515
Aed4g2409 460 Gene3D - 6 249 IPR011989 -
Aed4g2409 460 PANTHER U BOX DOMAIN-CONTAINING 3 459 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2409 207 424 U-box Gene Family AT2G23140 27.556 1.46e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2409 - - gmx:100819735 824.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2409 4 26326780 26328557 Aed4g2409 4 26326780 26328557 ECH