Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1832 ATGGAAGCAATGAACAGAAGCTCTTGCTCCACTTCCTCTTCCTCTGACTGTGGTTCTTCAGAGTCCAAGCCCGACAGAATCAAAGGCCCATGGAGCGCCGAAGAGGATCGGATCCTGACCCGCCTCGTCGACAGACACGGCCCACGGAACTGGTCCCTCATCAGCCGCTACATTAAGGGAAGGTCCGGCAAGTCCTGCCGCCTACGGTGGTGCAACCAGCTCAGCCCCTCCGTGGAGCACAGGCCATTCTCAGCCCAAGAGGACGAGACCATCATCGCAGCCCACGCTCAGTATGGTAATAGGTGGGCCACCATAGCCCGATTACTACCCGGCCGAACCGATAACGCCGTTAAGAATCACTGGAACTCCACACTCAAGCGCAAGTCCAAAGGTATGGACTTTAACATTGTTAATGCCAACAACGAACCAGAACCAGAACCGGAACCGGGCACTCCTTCTCACCACTTTGACGAGGACCCGTTGACCGCGTTGACTCTTGCTCCTCCAGGTATTGCTAATGCCTCTGTGCCGGACCACCGTGCTTCGCCGGAGAGTGTGCCGACCGAGTTTTGGGATATGATGAGGAATGTGATCGCCAGGGAAGTGAAGGAATACGTGTCTTCCAATTTTTCTGATAACTCGGGTTTTCATTAA 654 0.5459 MEAMNRSSCSTSSSSDCGSSESKPDRIKGPWSAEEDRILTRLVDRHGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVEHRPFSAQEDETIIAAHAQYGNRWATIARLLPGRTDNAVKNHWNSTLKRKSKGMDFNIVNANNEPEPEPEPGTPSHHFDEDPLTALTLAPPGIANASVPDHRASPESVPTEFWDMMRNVIAREVKEYVSSNFSDNSGFH 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1832 217 SMART sant 27 76 IPR001005 -
Aed4g1832 217 SMART sant 79 127 IPR001005 -
Aed4g1832 217 MobiDBLite consensus disorder prediction 1 20 - -
Aed4g1832 217 PANTHER MYB TRANSCRIPTION FACTOR 2 203 - -
Aed4g1832 217 Gene3D - 27 79 - -
Aed4g1832 217 Pfam Myb-like DNA-binding domain 31 89 - -
Aed4g1832 217 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 78 IPR017930 -
Aed4g1832 217 Gene3D - 81 147 - -
Aed4g1832 217 SUPERFAMILY Homeodomain-like 25 121 IPR009057 -
Aed4g1832 217 MobiDBLite consensus disorder prediction 138 161 - -
Aed4g1832 217 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Aed4g1832 217 CDD SANT 30 72 IPR001005 -
Aed4g1832 217 PANTHER MYB PROTEIN-RELATED 2 203 - -
Aed4g1832 217 MobiDBLite consensus disorder prediction 1 31 - -
Aed4g1832 217 CDD SANT 82 125 IPR001005 -
Aed4g1832 217 ProSiteProfiles Myb-like domain profile. 23 74 IPR001005 -
Aed4g1832 217 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 129 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1832 Aed-Chr4 22535789 22536442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1832 25 133 MYB Transcription Factor Family AT5G67300 79.817 6.04e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed4g1832 Myb_DNA-bind_6 1.4e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0177 11 1412116 1413543 Aed4g1832 4 22535789 22536442 PCT