Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed4g1592 | ATGGCATTTGCAGGGACAACTCAGAAGTGCATGGCTTGTGACAAAACAGTTTATCTGGTTGATAAGTTGACAGCAGATAACAGAGTGTACCATAAGGCTTGCTTCAGATGCCACCACTGCAAAGGAACACTCAAGCTTAGCAACTATAACTCTTTTGAGGGAGTTCTTTACTGCAGACCACACTTCGACCAACTGTTCAAAAGAACTGGTAGCCTTGAAAAGAGCTTCGATGGGACACCAAAAATTGCTAAACCAGAAAAATCCAGGGAAGAGAAACCTGCAGCAACGAAAGCCTCAAGTATGTTTGGTGGAACCAGAGATAAGTGTGCTGGTTGTCAGAAAACAGTGTATCCCACTGAAAAGGTGACTGTGAATGGAACCCCTTATCACAAGAGTTGTTTCAAATGCAGTCATGGAGGGTGTGTTATTAGTCCCTCAAATTACATAGCACACGAAGGCAAACTGTACTGCAAACACCACCACATTCAACTGATCAAGGAGAAGGGCAATTTAAGCCAGCTTGAAGGTGACAATAATGAGAAGAGTGCAGTAGCAGTACATGATCATGAGAAAACCAACGGTGAGGTAGTTGCAGCTGAGACATGA | 606 | 0.4356 | MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLEKSFDGTPKIAKPEKSREEKPAATKASSMFGGTRDKCAGCQKTVYPTEKVTVNGTPYHKSCFKCSHGGCVISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGDNNEKSAVAVHDHEKTNGEVVAAET | 201 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed4g1592 | 201 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
| Aed4g1592 | 201 | Gene3D | Cysteine Rich Protein | 104 | 173 | - | - | |
| Aed4g1592 | 201 | Gene3D | Cysteine Rich Protein | 4 | 74 | - | - | |
| Aed4g1592 | 201 | PANTHER | GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN | 1 | 181 | - | - | |
| Aed4g1592 | 201 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 135 | 174 | - | - | |
| Aed4g1592 | 201 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Aed4g1592 | 201 | SMART | lim_4 | 108 | 160 | IPR001781 | - | |
| Aed4g1592 | 201 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 101 | 134 | - | - | |
| Aed4g1592 | 201 | CDD | LIM2_SF3 | 109 | 169 | - | - | |
| Aed4g1592 | 201 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 76 | - | - | |
| Aed4g1592 | 201 | ProSiteProfiles | LIM domain profile. | 107 | 167 | IPR001781 | - | |
| Aed4g1592 | 201 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Aed4g1592 | 201 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Aed4g1592 | 201 | Pfam | LIM domain | 10 | 64 | IPR001781 | - | |
| Aed4g1592 | 201 | Pfam | LIM domain | 109 | 163 | IPR001781 | - | |
| Aed4g1592 | 201 | PANTHER | OS06G0237300 PROTEIN | 1 | 181 | IPR045268 | GO:0051015 | |
| Aed4g1592 | 201 | MobiDBLite | consensus disorder prediction | 79 | 94 | - | - | |
| Aed4g1592 | 201 | MobiDBLite | consensus disorder prediction | 76 | 99 | - | - | |
| Aed4g1592 | 201 | CDD | LIM1_SF3 | 6 | 68 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed4g1592 | Aed-Chr4 | 20686686 | 20688522 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Aed4g1592 | LIM | 2.3e-13 | CL0167 |
Event-related genes