Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1589 ATGTTGTGCGCTTGTTCTTCCGGGGAGCAATTCAAATTCGAAGAGCCGCCACACTCGCCGCCGGAGTCCCTCGCCACCCGGGATTTCTCCGCCAGCGGACTCTCTTCCAGAACCACAGGGGAATGGGAGCCTAAATTCGATGAAACTCAAGTAGAACAGGCTGAATCTACTCTTAAAGAAGCTCTTTCCTTAAACTACGAGGAGGCTAGGGCTTTGTTGGGGAGGCTTGAATACCAGAGAGGGAACTTCGATGCTGCACTTCAAGTGTTTCTGGGTATAGACATCAAGGGTTTGACCCCAGGAATAATCAATGCTATTGCTGAAAGAACGAAGCCAAGAAAACCACGTTCCAAGGCAGATATTGTGGTTCTGAATGTGATGTCATTGCATTCGGTTAGCCTGCTTCTTGAGGCAATTTTGCTTAAAGCAAGATCGTTGGAGGAACTTGGGCGATGCATTGAGGCTGCAAAGGAGTGCAGCATAATTCTGGATACGGTTGAATCTGCCCTTCCTGATGGAATGCCTGATGGTATTGGTGAAGATTGTAAGTTGCAAGAGATGTTTCATAAAGCATTGGAGTTGCTTCCAAGCCTTTGGATCAAGGCAGGGTTTCTAGATGAAGCAGTCACAGCATATCGCCGTGCTCTGGTCAAGCCGTGGAATTTGAAGCAACAAAGGTTGGCTGCTGTACAAAAAGATTTAGCTATGATACTGCTTTATGGTGGTGTCGAAGTAAGCCTACCCTCTCAGTTGCAGGTGTCGGGTAAAACAACACCTAATAGTAGTGTTGAAGAAGCAATACTTGTGCTATTGATACTCATGAGCAAGGTGGCAATTCGGGAAATAGACTGGGATGCTGAAATAATGGATCATCTTACTTTTGCACTTTCAGTGACTGGGATGTTCGAGTTATTGGCAGATCATGTAGAAAAAATCTTTCCAGGTATATGTAGTCGAGATGAGAGGTGGTACTTTCTTGCTCTGTGTTATAGTGCAGCAGGACATGATAAGGTAGCATTGAACCTTTTGAGGAAGGCTTTCGGCAGTTCTGAAGCAAACCATAGACCCCATTTTCCTTCATTTTTGTATGGAGCAAAACTCTGTTCCCTAGATCCTTGTCATGCCCATGAAGGCATTAACTTTTCACGTGAAGTTATTGATCTAGCTAAGCACCAAAATGAGCATTTTCTGAGTCAAGGCCATAAATTTCTTGGCATCTGCTATGGGGCTGCAGCTAGAATTTCTGTACTGGATTCTGAAAGAGGCATATTTCAAAGAGAGTCTTTGGACTCTCTAAACTGTGCAGCTGTCATTGGAAATGATGACCCGGAAGCTATATTCAGCCTTGGACTGGAAAATGCAATTCAAAGGAATCTGGATGCAGCTTACAACAACATAATGATGTACTCAGACATGACTGTTGGCAGTTCAAGAGGTTGGCAGTTACTAGCACTCATAGTATCTGCACAGAAGCGGTTTAAGGATGCTGAAACTATAGTTGATTTTGCTTTAGATGAGGCTGGGGGGATGGATCAACTTGAACTTCTTAGATTGAAAGCAGTACTTCAAATTGCTCAGCAGCAACCCAAGCAAGCAATAGAGACATATAGGATCTTGCTAGCACTAATTCAAGCAAAAAAGGAGCTTTTGCTTCAAGATAACAACATTGATCACGGACAAGCATTCAGGCATGAGGCATTAACAGAAAGGAAGTTGGAAATGGAAGCCTGGCAGGATTTGGCTACCATTTATACAGATGTCGGTTCCTTGCTTGATGCAAAAACTTGTGTTGACAAAGCCCAGTTGATAGGATTTCTCTCTCCAAGAAGCTGGCATATTACAGGGATGATGCTTGAAGCCCAATCATTATACAAAGAGGCATTTGTTTCCTTTTCGGTATCATTGTCAATAGAACCAGATTTCATTCCCAGTATCATTTCCACTGCAGAATTGTTGATGAAACTTGGTATGCAATCACTTCCAATTGCAAGAAGTTTTTTAATGAATGCTTTGCGATTAGAACCTACAAACCATGATGCTTGGTTCAACCTTGGATTGGTTTCAAAAATGGAAGGTTCATTACAGCAAGCAGCAGAGTTCTTTCAAGCTGCTTATGAATTGAAGCTTTCTACTCCAGTACAAAAATTTAAATAA 2154 0.4276 MLCACSSGEQFKFEEPPHSPPESLATRDFSASGLSSRTTGEWEPKFDETQVEQAESTLKEALSLNYEEARALLGRLEYQRGNFDAALQVFLGIDIKGLTPGIINAIAERTKPRKPRSKADIVVLNVMSLHSVSLLLEAILLKARSLEELGRCIEAAKECSIILDTVESALPDGMPDGIGEDCKLQEMFHKALELLPSLWIKAGFLDEAVTAYRRALVKPWNLKQQRLAAVQKDLAMILLYGGVEVSLPSQLQVSGKTTPNSSVEEAILVLLILMSKVAIREIDWDAEIMDHLTFALSVTGMFELLADHVEKIFPGICSRDERWYFLALCYSAAGHDKVALNLLRKAFGSSEANHRPHFPSFLYGAKLCSLDPCHAHEGINFSREVIDLAKHQNEHFLSQGHKFLGICYGAAARISVLDSERGIFQRESLDSLNCAAVIGNDDPEAIFSLGLENAIQRNLDAAYNNIMMYSDMTVGSSRGWQLLALIVSAQKRFKDAETIVDFALDEAGGMDQLELLRLKAVLQIAQQQPKQAIETYRILLALIQAKKELLLQDNNIDHGQAFRHEALTERKLEMEAWQDLATIYTDVGSLLDAKTCVDKAQLIGFLSPRSWHITGMMLEAQSLYKEAFVSFSVSLSIEPDFIPSIISTAELLMKLGMQSLPIARSFLMNALRLEPTNHDAWFNLGLVSKMEGSLQQAAEFFQAAYELKLSTPVQKFK 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1589 717 Coils Coil 59 79 - -
Aed4g1589 717 Gene3D Tetratricopeptide repeat domain 544 712 IPR011990 GO:0005515
Aed4g1589 717 PANTHER PROTEIN NPGR1 1 717 - -
Aed4g1589 717 SUPERFAMILY TPR-like 427 601 IPR011990 GO:0005515
Aed4g1589 717 MobiDBLite consensus disorder prediction 25 39 - -
Aed4g1589 717 Gene3D Tetratricopeptide repeat domain 41 243 IPR011990 GO:0005515
Aed4g1589 717 Gene3D Tetratricopeptide repeat domain 278 543 IPR011990 GO:0005515
Aed4g1589 717 MobiDBLite consensus disorder prediction 10 43 - -
Aed4g1589 717 ProSiteProfiles TPR repeat profile. 678 711 IPR019734 GO:0005515
Aed4g1589 717 SUPERFAMILY TPR-like 565 708 IPR011990 GO:0005515
Aed4g1589 717 SMART tpr_5 678 711 IPR019734 GO:0005515
Aed4g1589 717 SMART tpr_5 608 641 IPR019734 GO:0005515
Aed4g1589 717 SMART tpr_5 477 510 IPR019734 GO:0005515
Aed4g1589 717 SMART tpr_5 513 546 IPR019734 GO:0005515
Aed4g1589 717 PANTHER PROTEIN NPG1 1 717 IPR043376 -
Aed4g1589 717 Pfam Tetratricopeptide repeat 50 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1589 Aed-Chr4 20671269 20674866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1589 1 716 Calmodulin-binding Proteins AT1G27460 60.000 0.0 849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1589 4 20671269 20674866 Aed4g1589 4 20671269 20674866 ECH
Aed6g0385 6 3343349 3347603 Aed4g1589 4 20671269 20674866 PCT