Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1576 ATGGCTCTGGAAGCTCTTCAATCACCCACCACTGCCGCTCCATCATCGTTCAGTTCCTTTGAAGAAACCAATCTCAGTTACTTAGAGACGCCATGGACGAAAGGAAAGCGTTCTAAGCGTAGCCGCATGGACCAACACCCTTCATGCACCGAGGAAGAGTACCTCGCTCTCTGTCTCATCATGCTCGCTCGCGGCGGCACCGGTGGTGTCCCCACCTCCAAGCCTGCTGTCTCCGACAACAACTCCGCGCCGCTACCCGCCGCCAAACTCAGCTACAAATGCTCCGTCTGCAACAAAGCCTTCTCCTCTTACCAAGCACTCGGCGGACACAAGGCCAGCCACCGCAAACTGGCCGGCGCCAACGGCGAAGACCACTCGACCTCCTCCGCAGTCACGACGAGTTCCGCGTCGAACGGCGGTGCTAGGACCCACGAGTGCTCCATCTGCCACAAGACGTTCCCCACAGGACAGGCCTTGGGGGGACACAAACGTTGTCACTACGAAGGCGGTGGAAACACCAACAGTGCCGTAACCGCAGCCTCTGAAGGAGTGGGGTCCACTCACACAGGAAGCCACCGCGATTTTGATCTCAACCTCCCGGCTTTTCCGGACTTTTCAACTAGGTTCTTCGTGGATGACGAGGTTTCCAGCCCTCATCCATCCAAGAAGTCCCGTCTCAATTTGACTATACCCAAGTTTGAAATCCCTCAATTCTGA 717 0.5662 MALEALQSPTTAAPSSFSSFEETNLSYLETPWTKGKRSKRSRMDQHPSCTEEEYLALCLIMLARGGTGGVPTSKPAVSDNNSAPLPAAKLSYKCSVCNKAFSSYQALGGHKASHRKLAGANGEDHSTSSAVTTSSASNGGARTHECSICHKTFPTGQALGGHKRCHYEGGGNTNSAVTAASEGVGSTHTGSHRDFDLNLPAFPDFSTRFFVDDEVSSPHPSKKSRLNLTIPKFEIPQF 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1576 238 ProSiteProfiles Zinc finger C2H2 type domain profile. 144 166 IPR013087 -
Aed4g1576 238 SMART c2h2final6 144 166 IPR013087 -
Aed4g1576 238 SMART c2h2final6 92 114 IPR013087 -
Aed4g1576 238 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Aed4g1576 238 PANTHER ZINC FINGER PROTEIN ZAT10 1 229 - -
Aed4g1576 238 ProSitePatterns Zinc finger C2H2 type domain signature. 146 166 IPR013087 -
Aed4g1576 238 MobiDBLite consensus disorder prediction 122 141 - -
Aed4g1576 238 Pfam C2H2-type zinc finger 144 167 - -
Aed4g1576 238 Pfam C2H2-type zinc finger 92 116 - -
Aed4g1576 238 MobiDBLite consensus disorder prediction 115 141 - -
Aed4g1576 238 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Aed4g1576 238 Gene3D Classic Zinc Finger 90 166 - -
Aed4g1576 238 SUPERFAMILY beta-beta-alpha zinc fingers 92 166 IPR036236 -
Aed4g1576 238 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 229 IPR044653 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1576 Aed-Chr4 20578631 20579347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1576 1 230 C2H2 Transcription Factor Family AT1G27730 55.000 1.46e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed4g1576 zf-C2H2_6 2.2e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1576 4 20578631 20579347 Aed4g1576 4 20578631 20579347 ECH
Aed6g0377 6 3241898 3242605 Aed4g1576 4 20578631 20579347 PCT