Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1546 ATGGATCGTATAAAAGGGCCATGGAGTCCCGAAGAGGATGAAGCGTTACGGAGGTTGGTTCAGACTTACGGGCCTAGGAGCTGGTCCCTTATAAGCAAATCCATCCCGGGTCGCTCTGGGAAATCGTGCCGCTTGCGATGGTGCAATCAGCTCTCTCCGGAGGTGGAGCACCGTCCTTTCACGGCGGAGGAAGACGGATTGATCTTGAACGCCCACGCCAGGTTCGGGAACAAGTGGGCAACCATCGCCCGCTTCCTCAACGGCCGAACCGACAACGCCATCAAGAACCATTGGAATTCTACTCTCAAGAGATCCGCCACCACCACCAGTTCGGGTACTCCATCCGGATCCGATTTGAGTGATTCGGGTTTACCCACCGCGATTCTTGCAACTGCTTCTTCTTCCGAAACTGATCCTGCCACGTTACTCAGTTTATCTCTACCTGGATTCGATGGGTCTAACAATGGGCCAGGGCCCAGGCCCAGTTTCGGGCCGGCCCAGCAGTTGTTCAGCGAAGAGTTTATGAAGGTGATGCAAGAGATGATACGAGTGGAAGTGAGGAATTACATGTCAGGACTGGAAAGTAATAATAATGGTATGTGTATGCAAACCGATGCTATAATTAGGAACGCGGTGTTGGAGAGGATGGGAATTGCTAGGGTCGAATAG 669 0.5247 MDRIKGPWSPEEDEALRRLVQTYGPRSWSLISKSIPGRSGKSCRLRWCNQLSPEVEHRPFTAEEDGLILNAHARFGNKWATIARFLNGRTDNAIKNHWNSTLKRSATTTSSGTPSGSDLSDSGLPTAILATASSSETDPATLLSLSLPGFDGSNNGPGPRPSFGPAQQLFSEEFMKVMQEMIRVEVRNYMSGLESNNNGMCMQTDAIIRNAVLERMGIARVE 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1546 222 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 1 189 - -
Aed4g1546 222 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Aed4g1546 222 PANTHER MYB PROTEIN-RELATED 1 189 - -
Aed4g1546 222 CDD SANT 7 49 IPR001005 -
Aed4g1546 222 Pfam Myb-like DNA-binding domain 8 65 - -
Aed4g1546 222 SUPERFAMILY Homeodomain-like 2 98 IPR009057 -
Aed4g1546 222 SMART sant 56 104 IPR001005 -
Aed4g1546 222 SMART sant 4 53 IPR001005 -
Aed4g1546 222 MobiDBLite consensus disorder prediction 103 122 - -
Aed4g1546 222 ProSiteProfiles Myb-like domain profile. 1 51 IPR001005 -
Aed4g1546 222 CDD SANT 59 102 IPR001005 -
Aed4g1546 222 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 106 IPR017930 -
Aed4g1546 222 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Aed4g1546 222 Gene3D - 58 120 - -
Aed4g1546 222 Gene3D - 4 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1546 Aed-Chr4 20411213 20411881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1546 1 197 MYB Transcription Factor Family AT4G37260 48.897 3.59e-73 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed4g1546 Myb_DNA-binding 5.3e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0357 6 3092870 3093700 Aed4g1546 4 20411213 20411881 PCT