Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1543 ATGGAGTCCTCTGATGATGTATTAGCTGCTAAACGCCCTCTACCAACCAGATTTTCCCCTGGCCCTAACGGACAGAAAAGACTGAAGTTTAGTGGTAGCCTGCCATACCCAGCATGTGACCAAATTGAACCAAAGGCAACTAAGAATCTGAATGTTGTTGACTACAACAATCCATTTGCAATAACTGATGTTCTGGATAGTTTAGAGAATGGAAAATTTGGAACTGTCACAAAGGACATAGATGCCCTTATAGCCCTAAGAATGCAAATAATGGGCCCGTACTTTGCAAAATATCCCATACTTGTTAATCAATTATTGAAAGTGGTATCGAACCATGATGAAGAAACTCCTGAGTTGGAAAATCAACTAGTTAATGGTTTGACACATCGAAATGTCATAGATTTGGAGGGGGGAAACACCAAAAAAGATGTTCCCACAACAAAAGATACTGTTGTCATTATTGATTCAGATGACGAAGACGAAAGAGATAAAAAATCTGTCATTCCATTTCATGAAGTTCTGTTGCCAAGACAAGTTGCACCATCTCCTGCATTGAAGATGCTTGGGTATCACACTCCCATTCCTTACCTGGGAGAAAGTGATGATCTAAAAATCAAGACAAGTATGTCTGGTAAAGGGAACAACTCTAGGAGCAATCAAGGTGTTTATATCGGTGTACAAGAGGAGGAAGAAGATGAGGCTAATACTGAAGATGATGGTCTGGAAGATATTTGGAAGGAGATGTCAATGGCAATAGAATGTTCCAAAGATGTTTCTGAGGATCCTTTGCCGGAAGAAGAAGAGGAAGAAGATGACAATTGTGATCATTCTTTTGTCTTAAAAGACGATCTTGGCTATGTTTGTCGTGTTTGTGGGGTTATTGACCGAGGAATTGAAACCATATTTGAGTTTCAGTACAAGGTTAAACGGAGCACAAGAACTTACGCATCTGATTCATGGAATTCCAAAGGAAAAGCCGATGTATTTGGAATTAATGTTGCTGAAGATGGCCTCATAATAACCGATGTTGCAGCGCATCCCAGACACGTGAAACAGATGAAACCCCATCAGGTTGAAGGATTCAATTTTCTTGTTAGAAATCTTGCGGGTGACCATCCTGGTGGCTGCATCTTAGCCCATGCTCCGGGATCTGGGAAAACATTCATGATAATCAGCTTCATGCAAAGTTTTCTAGGAAAGTATCCTAATGCAAGACCCTTAGTGGTGCTTCCTAAGGGAATATTGTCAACATGGAAAAAGGAGTTTCTAACTTGGCAAGTGGAAGACATACCTTTATATGACCTTTACACAGTGAAGGCAGACAGTAGAAGTCAACAATTAGAAGTGTTGAAGCAATGGATGGAGCAGAAGAGTATCCTTTTCTTAGGATACAAACAGTTCTCCTCTATTGTTTGTGATAATGGGAACAACAGCATGTCTTTATCTTGCCAGGATATTTTACTCAAGGTTCCTTCAATTCTTATTTTAGATGAGGGACACAATCCTAGGAATGAAAACACAGATATGGTACAGTCACTTGCCAAAGTTCAAACGCCTAGAAAAGTTGTACTATCAGGAACCCTTTATCAAAATCATGTCAGGGAGGTGTTCAACATTTTAAATCTTGTTCGACCAAAATTTTTGAAGATGGAAACATCAAGGCCGATTGTGAAGCGCATTCATAGTAGAGTTCACATACCAGGGGTGAGAAGCTTCTACGATTTAGTTGAAAACACTTTGCAGAAGGACACAGATTTTAAAAGGAAAATAGCTGTTATACAAGATTTACGTGAGATGACGAGCAAGGTACTTCACTATTATAAAGGAGATTTTCTTGATGAGCTTCCTGGTCTTGTTGATTTTACTGTGGTGCTCACTCTTAGTCCTAGACAGAAGCCTGAAGTTCAGAAATTAAAAAAGCAATCTAGAAGAAAGTTCAAGATATGTTCTGTAGGCAGTGCTGTCTATCTGCATCCTATACTGAAACCACTAGCAGAAAATTGTGGTGAAAATTCTATATCTGATAGTACAGTGGATGATTTGATAGAGAAACTAGACATCAGAGATGGTGTGAAGTCAAAATTCTATTACAACATGCTAAATCTGTGTGAATCAGCAGGGGAGAAGCTTCTAGTTTTCAGTCAGTATCTGTTACCTTTGAAGTATTTAGAAAGGTTGACTATGAAGTGGAAAGGCTGGAGTCTCGGAAAAGAAATTTTTGTAATCTCAGGAGAATCAAGCTCTGAGCAACGAGAATGGTCCATGGAAAAATTTAACAATTCTCCTGATGCCAAAGTCTTCTTTGGCTCAATAAAGGCATGTGGAGAGGGTATATCATTGGTTGGGGCTTCTCGCATAATTATTTTGGACGTTCATCTCAATCCATCGGTTACACGTCAAGCTATAGGTCGTGCATTCAGACCTGGCCAGATGAAGAAAGTGTTTGTGTATCGTTTGGTATCTGCTGATTCTCCAGAAGAGGAAGATCACACTACTTGTTTCAAGAAGGAATTGATTTCAAAAATGTGGTTTGAATGGAACGAGTACTGCGGTGATCGAGCTTTTGAAGTTGAGGCAGTTGAGGTGAAAGAGTGTGGTGATCTATTTCTTGAAAGCCCACTTTTAGGGGAGGATGTAAAAGCTTTGTATAAAAGGTGA 2658 0.3954 MESSDDVLAAKRPLPTRFSPGPNGQKRLKFSGSLPYPACDQIEPKATKNLNVVDYNNPFAITDVLDSLENGKFGTVTKDIDALIALRMQIMGPYFAKYPILVNQLLKVVSNHDEETPELENQLVNGLTHRNVIDLEGGNTKKDVPTTKDTVVIIDSDDEDERDKKSVIPFHEVLLPRQVAPSPALKMLGYHTPIPYLGESDDLKIKTSMSGKGNNSRSNQGVYIGVQEEEEDEANTEDDGLEDIWKEMSMAIECSKDVSEDPLPEEEEEEDDNCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYASDSWNSKGKADVFGINVAEDGLIITDVAAHPRHVKQMKPHQVEGFNFLVRNLAGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFLTWQVEDIPLYDLYTVKADSRSQQLEVLKQWMEQKSILFLGYKQFSSIVCDNGNNSMSLSCQDILLKVPSILILDEGHNPRNENTDMVQSLAKVQTPRKVVLSGTLYQNHVREVFNILNLVRPKFLKMETSRPIVKRIHSRVHIPGVRSFYDLVENTLQKDTDFKRKIAVIQDLREMTSKVLHYYKGDFLDELPGLVDFTVVLTLSPRQKPEVQKLKKQSRRKFKICSVGSAVYLHPILKPLAENCGENSISDSTVDDLIEKLDIRDGVKSKFYYNMLNLCESAGEKLLVFSQYLLPLKYLERLTMKWKGWSLGKEIFVISGESSSEQREWSMEKFNNSPDAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQMKKVFVYRLVSADSPEEEDHTTCFKKELISKMWFEWNEYCGDRAFEVEAVEVKECGDLFLESPLLGEDVKALYKR 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1543 885 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 26 885 IPR044567 GO:0080188
Aed4g1543 885 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 492 847 IPR027417 -
Aed4g1543 885 Gene3D - 327 565 IPR038718 -
Aed4g1543 885 Pfam Helicase conserved C-terminal domain 700 808 IPR001650 -
Aed4g1543 885 Gene3D - 616 872 IPR027417 -
Aed4g1543 885 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 367 546 IPR014001 -
Aed4g1543 885 Pfam SNF2-related domain 373 632 IPR000330 GO:0005524|GO:0140658
Aed4g1543 885 MobiDBLite consensus disorder prediction 1 26 - -
Aed4g1543 885 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 548 IPR027417 -
Aed4g1543 885 SMART ultradead3 349 563 IPR014001 -
Aed4g1543 885 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 677 861 IPR001650 -
Aed4g1543 885 PANTHER PROTEIN CHROMATIN REMODELING 35 26 885 - -
Aed4g1543 885 SMART helicmild6 724 809 IPR001650 -
Aed4g1543 885 CDD SF2_C_SNF 698 820 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1543 Aed-Chr4 20388340 20396029 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aed4g1543 SNF2_N 3.9e-19 CL0023