Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1517 ATGTCACGCTTTTCATCTCTCGCTCTTGTTCTATTGTGTCTTTACAATATCTCTTTCTCTTTCTCAGAGGCCTTTAATGGTGGTGGGTTTAGCTCTCGATTCTACCGCGTTGCCAACACCGTTCGTCGTTCCGTCAACCGCACCAACTGTTACAACCAATCCTTGGTCTCTACCAAACTAACCTCAGCTCGAGGCGAATACCTAATCAGCTATTCAGTTGGAACCCCACCACGCCAATTCTTCGGAATTCTTGATACCGGTAGTGACATCGTTTGGCTTCAATGCATACCGTGTAAAAAGTGTTGGAACCAAACAACTCCCATATTCGAATCTTCAAAATTCAAAACATACAAAACCCTACCTTGCTCTTCCAAACAATGTAAATCTGTTTATGACACTTCTTGTTCCTCTAGGGAAAAATATTGCGTATATCACATTGGCTATGATGATGGTTCACACTCAATAGGAGACCTTAGTTTGGAGACTCTCACTCTAGACTCCACCAAGGGCTCTTCTGTCCAATTTCCTAGAACCGTGATCGGATGTGGACGTTACAATTCTCTTCCCTTTCAAGAAAATAAAAATTCCGGCATCGTCGGCATAGGGCACGGACCGGTGTCGCTTATAAATCAATTGAGTTCTTCAGTTGGTGGGAAGTTTTCTCATTGTTTGATTCCAGCACTGTCTTCTGCATCTAGCAAACTAAACTTTGGAGATGCTGCTGTGGTTTTGGGGCCCGGAACAGTCTCAACGCCGTTGGTCTTTAAAAAAGGAGAAGTGTTTTACTACCTAACCCTAGAAGCAACCAGTGTAGGAAGAAATAGAACAGAGTTTGGTGGAAGCCCTAGATCTGGTGGTGGAAAGGGAAATATTGTAATTGACTCAGGTACAACACTCACTGTTTTGCCTAATGATGTTTACTCAAAGGTGGTATCAGAAGTAGCAAAGGCAGTGAGATTGCAAAGTGTTGGGGATCCAAATCAAGTGTTGGAGCTTTGCTACAATGTTATACCTGATAAATTGGATGCAATTGTACCAGTGATGACAGCACATTTTAGTGGTGCAGATGTAGCATTAAATGCTCTCAACACCTTTGTTGAAGTGGCTGATGGGGTTGTATGCTTTGCTTTCCAATCTGGTGATGCAGTCTTTGGGAACTTGGCTCAGCAAAATCTCTTGGTTGGCTATGACATCCAAAAGAACACCGTGTCTTTTAAGCAGACAGATTGCACTAAGCAGTGA 1242 0.43 MSRFSSLALVLLCLYNISFSFSEAFNGGGFSSRFYRVANTVRRSVNRTNCYNQSLVSTKLTSARGEYLISYSVGTPPRQFFGILDTGSDIVWLQCIPCKKCWNQTTPIFESSKFKTYKTLPCSSKQCKSVYDTSCSSREKYCVYHIGYDDGSHSIGDLSLETLTLDSTKGSSVQFPRTVIGCGRYNSLPFQENKNSGIVGIGHGPVSLINQLSSSVGGKFSHCLIPALSSASSKLNFGDAAVVLGPGTVSTPLVFKKGEVFYYLTLEATSVGRNRTEFGGSPRSGGGKGNIVIDSGTTLTVLPNDVYSKVVSEVAKAVRLQSVGDPNQVLELCYNVIPDKLDAIVPVMTAHFSGADVALNALNTFVEVADGVVCFAFQSGDAVFGNLAQQNLLVGYDIQKNTVSFKQTDCTKQ 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1517 413 Gene3D Acid Proteases 43 238 IPR021109 -
Aed4g1517 413 PRINTS Pepsin (A1) aspartic protease family signature 291 302 IPR001461 GO:0004190|GO:0006508
Aed4g1517 413 PRINTS Pepsin (A1) aspartic protease family signature 73 93 IPR001461 GO:0004190|GO:0006508
Aed4g1517 413 Pfam Xylanase inhibitor N-terminal 67 239 IPR032861 -
Aed4g1517 413 PANTHER OS07G0603500 PROTEIN-RELATED 32 411 - -
Aed4g1517 413 Pfam Xylanase inhibitor C-terminal 262 406 IPR032799 -
Aed4g1517 413 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 82 93 IPR001969 GO:0004190|GO:0006508
Aed4g1517 413 SUPERFAMILY Acid proteases 63 410 IPR021109 -
Aed4g1517 413 ProSiteProfiles Peptidase family A1 domain profile. 67 406 IPR033121 -
Aed4g1517 413 PANTHER ASPARTIC PROTEINASE CDR1-RELATED 32 411 - -
Aed4g1517 413 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 291 302 IPR001969 GO:0004190|GO:0006508
Aed4g1517 413 CDD pepsin_A_like_plant 66 410 IPR034161 -
Aed4g1517 413 Gene3D Acid Proteases 239 413 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1517 Aed-Chr4 20119488 20120783 Dispersed/Tandem