Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1441 ATGGCATTAGGGGATGCATCAACTTCAAAAAGTTCAAAGAAACATTCCATTAATGATGTAACTATATCTACCATTTTACCAAGTTTCAAACCATTCATCACAAAGGCACAGACACAGTCTTCCATGGGAAGTAACTGCCAAAACACCACCCAAGAACCTCTCAGCAGTGCATACCAAACCAATCTTGATAGAATCCTCACATGGATGTCCTCTGATGCAGCCACAAGCCAAGGCTACAATCACAGCATCAATGGCTCTGTGTACGGCCTCTATGATTGCGGTGGTGACCTATTCGGATACTTTTGTCAACTCTGTGTAGCTAATGCTATCAAAGAAGTCCCTCAGCACTGCCCCAACAGGGTATCTGCTTTGGTGTGGAATGATTACTGCATGATAAGGTACTCGAACGAGAGCTTCTTCGGGAAAGCTCTAACTAACCCCTCATGGCATAATCATGGAACCAAAAACATATCCGACGTGGGAGAGATTCAGAAAGGTGAGGATTTTGTGAGAAGTATGATCAGTAATGCAACTGTGGAGACCAACCAGCTGTACTACATGGATGGATTCAATTTGAGTGCCACTGAACAAAGGTATGGAGTGGTGCAATGCACTAGAGATCTCACAAATGAAGACTGCAGCCAGTGTTTGGAGGCAATATTAGGAATTCTACCAGATGGAAAACAAATTGCAGTCAAAAGGCTCTCAGAATTTTCTGGTCAAGGCTCAGAGGAGTTCAATAATGAAGTAATGTTTATAGCTAAATTGCGGCATCGCAACCTTGTAAGACTTTTGGCATGCTGCTTAGAGGAAAATGAAAAGATACTTGTATATGAGCATTTGCTGAATAAAAGTCTCGACTTCCACCTGTTTGGTATGTTTTCACATTACTTCAATGCTTCAATGAATAGCAGTGTTGCTTTTACTGCAGTTTGTTCTGCAGCATTTTGA 951 0.4185 MALGDASTSKSSKKHSINDVTISTILPSFKPFITKAQTQSSMGSNCQNTTQEPLSSAYQTNLDRILTWMSSDAATSQGYNHSINGSVYGLYDCGGDLFGYFCQLCVANAIKEVPQHCPNRVSALVWNDYCMIRYSNESFFGKALTNPSWHNHGTKNISDVGEIQKGEDFVRSMISNATVETNQLYYMDGFNLSATEQRYGVVQCTRDLTNEDCSQCLEAILGILPDGKQIAVKRLSEFSGQGSEEFNNEVMFIAKLRHRNLVRLLACCLEENEKILVYEHLLNKSLDFHLFGMFSHYFNASMNSSVAFTAVCSAAF 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1441 316 Gene3D - 38 139 IPR038408 -
Aed4g1441 316 ProSiteProfiles Gnk2-homologous domain profile. 145 252 IPR002902 -
Aed4g1441 316 ProSiteProfiles Gnk2-homologous domain profile. 40 139 IPR002902 -
Aed4g1441 316 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 27 221 - -
Aed4g1441 316 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 221 292 - -
Aed4g1441 316 Pfam Protein tyrosine and serine/threonine kinase 228 290 IPR001245 GO:0004672|GO:0006468
Aed4g1441 316 Gene3D Phosphorylase Kinase; domain 1 205 280 - -
Aed4g1441 316 Pfam Salt stress response/antifungal 183 219 IPR002902 -
Aed4g1441 316 Pfam Salt stress response/antifungal 46 136 IPR002902 -
Aed4g1441 316 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 27 221 - -
Aed4g1441 316 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 221 292 - -
Aed4g1441 316 SUPERFAMILY Protein kinase-like (PK-like) 221 307 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1441 Aed-Chr4 18939025 18944053 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1441 218 291 Receptor kinase-like Gene Family AT4G05200 58.108 1.66e-19 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Aed4g1441 PK_Tyr_Ser-Thr 5.8e-07 CL0016