Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1431 ATGAGACCACGGATGAATAAAGATATTGAAGATGAGGTGCTTCCCAATGATATGAGTGGGGCACAGATGAATGATGAGAGTTATGAAGTAAGTGCTGGCATTGTTCTGAAGAAAGGGCCATGGACATCAACTGAAGATGATATTTTGGTGGATTATGTCAAGAGGCATGGGGAGGGGAACTGGAATGCTGTTCAGAAGCACACAGGGCTATTACGTTGCGGAAAAAGTTGCCGGCTGCGATGGGCTAATCACCTAAGGCCGAATTTAAAGAAAGGTGCATTTACTGCAGAAGAGGAGCGGGTGATTGCTGAACTTCATGCCAAAATGGGAAACAAATGGGCACGGATGGCAGCACATTTACCTGGTCGTACAGATAATGAGATAAAGAACTACTGGAACACCCGGATCAAGAGGCGTCAACGGGCTGGATTGCCACTTTATCCTCCAGAAGTGAGTTTGCAAGCTTATCAAGAGAGTCAGCATAGCCAAAGCTCTGGTGGACATAATGGTGGAAATAAAATGCACCCTGATTTCTTGCAGAAACACAGTTATGAGATACATGATGCAGTATTTGACAGTCTGAAGGATAATCAGGGAATCTTACCTTATGTGTCTGAGCTTTCTGATATTTCTGTTTATGGCAATATGCTAAAAGGTCTTGATTCTTCTCAGTATTGTAGCTTTGTGCCACCAACATCACCTAAGCATAAGCGTACTAAAGAGTCAACCATACCATTTATTGATTCCAGTGATATGAAAAAAAATGGTTTATATTCATTTGATCAAATTCGGGACAATAATTCTGATAAGATTGCACAATCTTTTGGAATGCAAGGACCCCTTGATCCTGGTCCCTCCTCGCACAGCTCAATTTGTTACAGCCATTCACTTTCAAATGGCAATTCCTCCACTTCTAAGCCTTATGAGGCTGTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAACTTGATTTAGGTAGCTGGGGTTCATCTCCCCCACCTGCGTTGCTTGAGTCAGTTGATGATTTCTTTCAGTCTCCTACACCAATTAGTACACTGGAGTCAGATTGTTCTTCTCCACAAAATAGTGGCCTGCTGGATGCTTTACTTTATCAGGCAAAGACTATGAGCAGTTCAAAGAATCATCATTGTTCTGACAAGAGTTCAAATTCTTCTACTGCAACCCCTGGTGACAGAGCTGACAGCTCTGCTTTGAATGTGTACGAGACAGAATGGGAAGATTATGCTGATCCTGTATCTCCCTTTGGTGCAACTTCAATATTGAATGAGTGCCCTGCTTATAGACCCAATGCGAATTCATTGGACGAACAGCTACCCATTCAGACCTTTACTGGCAACATTCCGAAATTAGAGTCTGTTGACCAGGTTTGGCCTCCTGACAGTGAAAATCACAGCTTGTCCCTGTTGAATGCTACTCATCCAGACTTCTTGCTTGCTTTGGATTGGTATGACCTAGGAGGTTCTGGGCATGCCAAGAACCAAGCCATCACAACTGATGCTGCAACGGCCATTCTTGGAGATGATTTGGCCACTGACCATAATCATATGATTGATGAAACTTCTAAATCTATGTTTGGAAATCCTTTCCAGCCTCTCTAA 1620 0.4315 MRPRMNKDIEDEVLPNDMSGAQMNDESYEVSAGIVLKKGPWTSTEDDILVDYVKRHGEGNWNAVQKHTGLLRCGKSCRLRWANHLRPNLKKGAFTAEEERVIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSLQAYQESQHSQSSGGHNGGNKMHPDFLQKHSYEIHDAVFDSLKDNQGILPYVSELSDISVYGNMLKGLDSSQYCSFVPPTSPKHKRTKESTIPFIDSSDMKKNGLYSFDQIRDNNSDKIAQSFGMQGPLDPGPSSHSSICYSHSLSNGNSSTSKPYEAVKLELPSLQYPELDLGSWGSSPPPALLESVDDFFQSPTPISTLESDCSSPQNSGLLDALLYQAKTMSSSKNHHCSDKSSNSSTATPGDRADSSALNVYETEWEDYADPVSPFGATSILNECPAYRPNANSLDEQLPIQTFTGNIPKLESVDQVWPPDSENHSLSLLNATHPDFLLALDWYDLGGSGHAKNQAITTDAATAILGDDLATDHNHMIDETSKSMFGNPFQPL 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1431 539 CDD SANT 40 85 IPR001005 -
Aed4g1431 539 Pfam Myb-like DNA-binding domain 91 134 IPR001005 -
Aed4g1431 539 Pfam Myb-like DNA-binding domain 38 85 IPR001005 -
Aed4g1431 539 ProSiteProfiles Myb-like domain profile. 36 85 IPR001005 -
Aed4g1431 539 CDD SANT 93 134 IPR001005 -
Aed4g1431 539 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 85 IPR017930 -
Aed4g1431 539 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 4 530 - -
Aed4g1431 539 MobiDBLite consensus disorder prediction 156 175 - -
Aed4g1431 539 MobiDBLite consensus disorder prediction 156 170 - -
Aed4g1431 539 SUPERFAMILY Homeodomain-like 37 132 IPR009057 -
Aed4g1431 539 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 4 530 - -
Aed4g1431 539 MobiDBLite consensus disorder prediction 379 402 - -
Aed4g1431 539 Gene3D - 37 90 - -
Aed4g1431 539 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 140 IPR017930 -
Aed4g1431 539 Gene3D - 93 139 - -
Aed4g1431 539 MobiDBLite consensus disorder prediction 1 21 - -
Aed4g1431 539 MobiDBLite consensus disorder prediction 379 400 - -
Aed4g1431 539 ProSiteProfiles Myb-like domain profile. 86 136 IPR001005 -
Aed4g1431 539 SMART sant 90 138 IPR001005 -
Aed4g1431 539 SMART sant 37 87 IPR001005 -
Aed4g1431 539 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 53 62 IPR001345 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1431 Aed-Chr4 18824092 18828621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1431 35 520 MYB Transcription Factor Family AT3G11440 44.841 5.29e-118 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed4g1431 Myb_DNA-binding 2.5e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2845 1 23665797 23670698 Aed4g1431 4 18824092 18828621 PCT