Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1423 ATGGAAGAAGGGTTGTGTCAAAACTCAGTTCCTGGTTCAGGTTTTGTTGATAAAACTAGGATTGTAGAGGCTAAACCCCTGCGTAGTTTGGCACCTGTGTTGCCAAAATCTCTTCAATCCTCTCTCTCTGGCCGGTATCCATCTGTGTTTCCTCCATTTGTTTTGTTTGAGGAACCTCAAGAGTCTCGACCATCACCGGCTCCCATGCCGGCGGCTCCAATAAGGTCCTTTAGGAACCCAATAGGTGAAGAAGAAGCCCCTCATGGAGGAGCCAATGGAGAGGCTTCTTCAACTATGGAGGGTATCGATGGTAGTAAGAGTGTTGATGATAGCCAAAAACGTGCGGTGCCGCCTATGAACAGCTGCAAATCTTCCCTAAAGAGGAGTAAGAAAGCTAAGGAGTCGCAGTTCGATTCGAGTTCTTTGGTTGGCGGTATCAGTGTGACCAAAAGGGAAGATGGTGATCGCGAAGCGGTTAATCTTGTGCTCATGACTTATGATTCTCTTCGTAGAAGGCTCTGCCAACTTGAAGATTCCAAGGAGTTGAACACGACGATGGTGATCAAGCGGGCGGATTTAAGAGCAAGCAATGCAATGACGGGCAAAGGGTTTCGAACAAACACGAGGAGGAGAGTAGGGCTAGTCCCCGGTGTTGAGATTGGGGACATTTTCTTTCTGCGGATGGAAATGTGTCTTGTGGGTTTACATGGCCAGTCAATGAGTGGAATTGATTACATGACCATCAAGGATGAGCTCCAGGAGGAACCTGAACCTGTGGCTTTAAGCATTGTTTCGTCAGGAGTGTATGATAATGATGCAGATGATGATGATGTTTTAATCTATAGTGGTCAGGGTGAGAACTTCAACAAGAAAGATAAGCATGTGATTGATCAGAAGCTTCAAAGGGGTAATCTTGCTTTAGATAAAAGTTCACGACGCCATAATGAAATAAGAGTCATCCGTGGCTTGAGAGATGCTGCGAACAAAAATGCAAAAGTCTATGTTTATGATGGTCTGTATAAAATCCAAAATTCTTGGATAGAAAGAGGGAAATCTGGCGGCGGTGTATTTAAGTATAAGTTTGTTAGATTGCCTGGACAACCCAGTGCTTTTGCTGTTTGGAAATCGGTTCAGAAGTGGAAAACGGGCACAAGCACGTCTTCAAGGACTGGCCTTATTCTTTCAGACCTCTCTACAGGAGTTGAGAGTATTCCTGTATCACTTGTCAATGAAGTTGATAATGAGAAGGGCCCTTCGTTTTTCACTTATTTGTCTTCTCTCAGAGATCCAAAACCATTCAATTTAGTGCAATCTTCACATGGCTGCAACTGTAACAAAACATGTGTCCCTGGAGATTTGACCTGCTCTTGCATTCAAAGAAATGAAGGTGACTTTCCGTATACTGCAAATGGTGTTCTAGTGAGTCGGACACCGTTGGTTCATGAGTGTGGCCCAATGTGTAAGTGTTTTCCTAACTGCAAGAATCGAGTATCGCAGACTGGTTTGAAGCACCAAATGGAAGTGTTCAAAACAAAAAATAGAGGGTGGGGACTTCGGTCACTGGATCCTATACGTGCTGGTACTTTTATTTGTGAGTATGCAGGAGAAGTTACTGACAGAGCCAAGGTAAATAAGAATAGGGGATATGATGATGAGTATGTTTTTGATACAAGCCGTGTTTTCGATCCATTCAAATGGAATTATGAACCTAGCTTATTGGAAGAAATAAGCTCAAATGTCTCTAGTGAAGATTATGCTATACTGTCTCCTCTAATTATCAGTTCTAAGAACTTTGGAAATGTGGCTAGATACATGAATCATAGTTGCTCCCCAAATGTTTTCTGGCAGCCAGTCTCATATGCAGAAAATAATCAATCCTTTCTTCACATTGCATTTTTTGCCCTCAGACACATTCCTCCAATGACAGAGTTAACATATGATTATGGATGTTCTGGTTATGCTGATAGTAGCAGTGCACTCAAAGGGAGAAAGAAATGCATGTGTGGATCATCAAAATGCCGTGTCTCTGATAGACAGGCATGGTGCTGGCAAATGTATTCATGGCTAAAAAGATGTGAAGAACCAGATACATCTTGGGAATTCTAG 2106 0.4288 MEEGLCQNSVPGSGFVDKTRIVEAKPLRSLAPVLPKSLQSSLSGRYPSVFPPFVLFEEPQESRPSPAPMPAAPIRSFRNPIGEEEAPHGGANGEASSTMEGIDGSKSVDDSQKRAVPPMNSCKSSLKRSKKAKESQFDSSSLVGGISVTKREDGDREAVNLVLMTYDSLRRRLCQLEDSKELNTTMVIKRADLRASNAMTGKGFRTNTRRRVGLVPGVEIGDIFFLRMEMCLVGLHGQSMSGIDYMTIKDELQEEPEPVALSIVSSGVYDNDADDDDVLIYSGQGENFNKKDKHVIDQKLQRGNLALDKSSRRHNEIRVIRGLRDAANKNAKVYVYDGLYKIQNSWIERGKSGGGVFKYKFVRLPGQPSAFAVWKSVQKWKTGTSTSSRTGLILSDLSTGVESIPVSLVNEVDNEKGPSFFTYLSSLRDPKPFNLVQSSHGCNCNKTCVPGDLTCSCIQRNEGDFPYTANGVLVSRTPLVHECGPMCKCFPNCKNRVSQTGLKHQMEVFKTKNRGWGLRSLDPIRAGTFICEYAGEVTDRAKVNKNRGYDDEYVFDTSRVFDPFKWNYEPSLLEEISSNVSSEDYAILSPLIISSKNFGNVARYMNHSCSPNVFWQPVSYAENNQSFLHIAFFALRHIPPMTELTYDYGCSGYADSSSALKGRKKCMCGSSKCRVSDRQAWCWQMYSWLKRCEEPDTSWEF 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1423 701 SUPERFAMILY PUA domain-like 195 385 IPR015947 -
Aed4g1423 701 SMART G9a_1 208 367 IPR003105 -
Aed4g1423 701 Pfam Pre-SET motif 398 496 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aed4g1423 701 SUPERFAMILY SET domain 403 674 IPR046341 -
Aed4g1423 701 ProSiteProfiles SET domain profile. 504 649 IPR001214 GO:0005515
Aed4g1423 701 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 22 700 IPR025794 GO:0016571
Aed4g1423 701 Gene3D SET domain 372 657 IPR046341 -
Aed4g1423 701 Pfam SAD/SRA domain 212 367 IPR003105 -
Aed4g1423 701 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 14 676 - -
Aed4g1423 701 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 14 676 - -
Aed4g1423 701 Pfam SET domain 515 649 IPR001214 GO:0005515
Aed4g1423 701 ProSiteProfiles YDG domain profile. 213 363 IPR003105 -
Aed4g1423 701 SMART preset_2 394 488 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aed4g1423 701 SMART set_7 504 655 IPR001214 GO:0005515
Aed4g1423 701 MobiDBLite consensus disorder prediction 80 134 - -
Aed4g1423 701 Gene3D - 211 371 IPR036987 -
Aed4g1423 701 ProSiteProfiles Pre-SET domain profile. 440 501 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1423 Aed-Chr4 18666465 18671310 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1423 12 676 Su(var)3-9 homologs AT5G04940 50.210 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aed4g1423 SAD_SRA 6.2e-47 CL0178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2840 1 23610691 23614826 Aed4g1423 4 18666465 18671310 PCT