LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed4g1409	ATGGACATCGAATTTGAGGATAGACAAGAAGAAACAGTGTCAGATATGATACCAAGCAATCAGCAGAGGAAAAAACAGTCGTTTTTGTGGAAAGTTTTGGCCATGAGAGAGAGAAACATTGGAAGGACTATGGAGAGAGGAGGTTCTAATGATTCCCTTGATGCACTTTCTGATTCATCCTTTGACAATCGAGCTTCAGAACCTTCTATGTCTTCTGGTGAAGCAATTCAAAATTTCAGAGTTCTTGCAGCAACATGGAATGTAGGAGGGCAATGCCCCACTGGAAACCTTGATCTGAGTGATTTTCTTCAGGTTCGAAATGAACCGGACATGTATGTTTTGGGCTTTCAGGAGATTGTCCCTTTAAATGCTGGAAATGTGCTGGTATTGGAGGATAATGAGCCTGCTGCAAAATGGCTTGCTTTAATCAACCAATCACTCAATGGCCCTTCAGATTTGACTTCTAAAGGACTAAAACCGGCCGCGTCTTTTGGCGGCTCATTGTTCTCCCAAAAGCCTTCTTTGAAGAAGATTAAGAAAACTTTCAAGAAACTAAATGGAAAGAGGCTAAAGAGTTGTAACTGTGTTTTTGAAATGGAAAGAAAGGCTGGCAAGGATTTCTGTTTCCGCTGCCAAGAATCAAACTTCAACTCGGACGATTCTTCCACCGAAGAGGAGGATGAGAATTTCCCAATTCCTGTTGCCTTGGCTACTAGCCAGATGAAATACAGCCTTGTTTCATGTAAGCAAATGGTTGGAATTTTTGGGTGTATATCAGTGAGCATGTCGTTTTATCAGACAAGTTTTTGCTTTATCTGTAGTCATTTGGCATCTGGAGAGAAAGAGGGCGATGAGCTTCGCAGGAATCTTGATGTCATAGAGATTCTGAAGAACACTCAGTTTCCTAGGATTTGCAAGACACCACATAGTAGGATGCCTGACAAAATCTTAGATCACGACCGGATCATATGGTTCGGAGACTTGAATTACAGAATTTCTTTGAGCCATGATGATGCAAAAAGGCTTGTGGAAAAGAAGGACTGGCCTGCTCTTTTCAACAAGGATCAGCTTAAAATGGAAAGGGAAGCAGGTCGAGTATTCAAAGGGTGGAAAGAGGGAAAGATCTACTTTGCACCTACTTATAAATATGCCTTCAACTCAGACACTTACTATGTTGAAGAAGTTGAGGTTATGTCCAGAGGACAGAAAAAGAAAGTTTCAACTTACAACTTTCAGAACATTGATGATCTTGTATCCACAAGAAGTCCATATTATTCTTGA	1281	0.4091	MDIEFEDRQEETVSDMIPSNQQRKKQSFLWKVLAMRERNIGRTMERGGSNDSLDALSDSSFDNRASEPSMSSGEAIQNFRVLAATWNVGGQCPTGNLDLSDFLQVRNEPDMYVLGFQEIVPLNAGNVLVLEDNEPAAKWLALINQSLNGPSDLTSKGLKPAASFGGSLFSQKPSLKKIKKTFKKLNGKRLKSCNCVFEMERKAGKDFCFRCQESNFNSDDSSTEEEDENFPIPVALATSQMKYSLVSCKQMVGIFGCISVSMSFYQTSFCFICSHLASGEKEGDELRRNLDVIEILKNTQFPRICKTPHSRMPDKILDHDRIIWFGDLNYRISLSHDDAKRLVEKKDWPALFNKDQLKMEREAGRVFKGWKEGKIYFAPTYKYAFNSDTYYVEEVEVMSRGQKKKVSTYNFQNIDDLVSTRSPYYS	426

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed4g1409	426	MobiDBLite	consensus disorder prediction	1	24	-	-
	Aed4g1409	426	Gene3D	Endonuclease/exonuclease/phosphatase	61	410	IPR036691	-
	Aed4g1409	426	SUPERFAMILY	DNase I-like	75	390	IPR036691	-
	Aed4g1409	426	MobiDBLite	consensus disorder prediction	41	70	-	-
	Aed4g1409	426	PANTHER	TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9	256	397	IPR045849	GO:0004445\|GO:0046855
	Aed4g1409	426	PANTHER	TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9	72	255	IPR045849	GO:0004445\|GO:0046855
	Aed4g1409	426	PANTHER	TYPE I INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 10	256	397	-	-
	Aed4g1409	426	PANTHER	TYPE I INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 10	72	255	-	-
	Aed4g1409	426	MobiDBLite	consensus disorder prediction	50	70	-	-
	Aed4g1409	426	SMART	i5p_5	77	425	IPR000300	GO:0016791\|GO:0046856

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed4g1409	Aed-Chr4	18490084	18494928	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed4g1409	250	383	Acyl Lipid Metabolism Gene Families	AT2G43900	29.747	1.52e-14	74.3