Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1390 ATGAAGAGGTCCCCAGCATCTTCTTCATGCTCATCATCATCCACTTTTGAAGCTTCCAATGGAAAAAGAAAACCTAAGCATCCAAGGAAGAATTTGAAGTCATCACAAAAATGCAAACAGAACCAAGTCACAACCACCACTGCTGGTGGCAGAAGAAGCTCTATCTATAGAGGAGTCACAAGGCATAGGTGGACAGGGAGGTTTGAAGCTCACCTATGGGATAAGAGCTCTTGGAACAACATTCAGAGCAAGAAGGGTAGACAAGGGGCATATGATACTGAAGAAGCTGCAGCTCATACCTATGACCTTGCAGCCCTTAAGTACTGGGGAAACGATGCAACCCTGAATTTTCCGATAGAAACTTATGGCAAGGACGTTGAAGAAATGGACAAGGTTTCAAAAGAAGAATATTTGGCTTCTTTGCGGCGCCAAAGCAGTGGCTTTTCTAGAGGCATCTCTAAGTACCGAGGGGTTGCTAGGCATCATCATAATGGTCGCTGGGAAGCTCGCATTGGAAGAGTATGTGGAAACAAGTACCTCTACTTGGGAACATATAGTAAGTCGTAA 567 0.4462 MKRSPASSSCSSSSTFEASNGKRKPKHPRKNLKSSQKCKQNQVTTTTAGGRRSSIYRGVTRHRWTGRFEAHLWDKSSWNNIQSKKGRQGAYDTEEAAAHTYDLAALKYWGNDATLNFPIETYGKDVEEMDKVSKEEYLASLRRQSSGFSRGISKYRGVARHHHNGRWEARIGRVCGNKYLYLGTYSKS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1390 188 MobiDBLite consensus disorder prediction 35 53 - -
Aed4g1390 188 ProSiteProfiles AP2/ERF domain profile. 55 118 IPR001471 GO:0003700|GO:0006355
Aed4g1390 188 Gene3D AP2/ERF domain 153 188 IPR036955 GO:0003700|GO:0006355
Aed4g1390 188 Gene3D AP2/ERF domain 55 120 IPR036955 GO:0003700|GO:0006355
Aed4g1390 188 SUPERFAMILY DNA-binding domain 54 120 IPR016177 GO:0003677
Aed4g1390 188 SUPERFAMILY DNA-binding domain 153 186 IPR016177 GO:0003677
Aed4g1390 188 SMART rav1_2 55 124 IPR001471 GO:0003700|GO:0006355
Aed4g1390 188 Pfam AP2 domain 55 110 IPR001471 GO:0003700|GO:0006355
Aed4g1390 188 MobiDBLite consensus disorder prediction 1 19 - -
Aed4g1390 188 CDD AP2 54 119 IPR001471 GO:0003700|GO:0006355
Aed4g1390 188 ProSiteProfiles AP2/ERF domain profile. 154 188 IPR001471 GO:0003700|GO:0006355
Aed4g1390 188 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WRI1 1 186 - -
Aed4g1390 188 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 186 - -
Aed4g1390 188 MobiDBLite consensus disorder prediction 1 54 - -
Aed4g1390 188 PRINTS Ethylene responsive element binding protein signature 100 120 IPR001471 GO:0003700|GO:0006355
Aed4g1390 188 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1390 Aed-Chr4 18129886 18132914 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1390 1 186 AP2-EREBP Transcription Factor Family AT1G51190 57.368 1.01e-64 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Aed4g1390 AP2 1.5e-10 CL0081