Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1381 ATGCAAGTTGTCTATTCCCAGCTGACACAGAATGGTCCTCAATGGCAGAATGAACTTGAAGAATCAACTAATGCTGAAGTGAATATTCCTTCAAATGAAGATGGTAATGGTACTCCAAACATTTACACAAATCCTACACTGAAACCGGTGACCAGAGCAGTTCATAAGACTAATGAACACAGGAATGCTAAAAGAGATATTGATCATTTCAAGAAGCCAGACAAGGTCCTGCCGTGTCCTCGCTGTGATAGTCTCGAAACAAAGTTTTGCTACTTCAACAATTACAATGTTAACCAACCTAGGCATTTCTGCAAAAATTGCCAAAGGTATTGGACAGCCGGGGGCACAATTAGAAACATTCCTGTCGGGGCCGGTAAGCGTAAGAATAAGCACTCAGATGCTGCATCTGTTATCAAAGGAATGGAGAACATCTCAAGTCTCAGGGAGGAAACGCCTCTTAGTGAATCCTTAGAAACTGTGATAAGTCTCAATGGCCAGACAAAAATTGAAATGGCTTTTTCCACTCTCAAAGATGATGATGTGGAGTCTTCCAGCTCTTCTATGAGATCTAATGAAATAGAGAAGGTTGGTTTGACACAACACTCTAATGGTTTAGTTCCTTCACATTCATTTCAGTATTATCCTGTTCCTTCATGGTCTTACCAATGGAATCCATGTTGGAATGTCAAGGAGTTTAGGTCTAGTAGTAGTAGCATAAGTTCTAGACCTGTTTACACAGGTTCTTCTCCAACTATGATGGCAGTTCCTGGCTTCTCCATACCAACAGTAGTACTTCCAGGGGCACCTTATTCGTATTCAGGTTTTATGTCAAGCTCAGGTGACCAAAAGGAAGAGGCTAATTCATTGGTTGGATCTGCATTTAGTGGCATCTCATTGTCTTCATCTTCAGTTAGCAACAGTACTTGTTCTGGTAATTATAGGTCCCCAACCTTAGGAAAACATTCTAGAGATGCAATGAAACAGAATCTTTGGGTGCCTAAGACTGTAAGAATTAATGATCCAGAAGAGGCTGCAAATAGTTCTATATGGTCAACTTTGGGGACAAAGTCTGAACAGAACAAACTCATTATGAAAGGAAGTGTTTTTAAATCATTTGAACCTAAGTCAAGTGCCACTCCTCATATTTTAGATGATAATAAAATTCTAAGGGCAAACCCTGCAGCTTTCTTGCGCTCCGAATCTTTTCAGGAAAGCATGTAA 1221 0.4021 MQVVYSQLTQNGPQWQNELEESTNAEVNIPSNEDGNGTPNIYTNPTLKPVTRAVHKTNEHRNAKRDIDHFKKPDKVLPCPRCDSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTIRNIPVGAGKRKNKHSDAASVIKGMENISSLREETPLSESLETVISLNGQTKIEMAFSTLKDDDVESSSSSMRSNEIEKVGLTQHSNGLVPSHSFQYYPVPSWSYQWNPCWNVKEFRSSSSSISSRPVYTGSSPTMMAVPGFSIPTVVLPGAPYSYSGFMSSSGDQKEEANSLVGSAFSGISLSSSSVSNSTCSGNYRSPTLGKHSRDAMKQNLWVPKTVRINDPEEAANSSIWSTLGTKSEQNKLIMKGSVFKSFEPKSSATPHILDDNKILRANPAAFLRSESFQESM 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1381 406 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 14 406 - -
Aed4g1381 406 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677|GO:0006355
Aed4g1381 406 MobiDBLite consensus disorder prediction 27 46 - -
Aed4g1381 406 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677|GO:0006355
Aed4g1381 406 PANTHER CYCLIC DOF FACTOR 2 14 406 IPR045174 GO:0003700|GO:0006355
Aed4g1381 406 Pfam Dof domain, zinc finger 74 131 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1381 Aed-Chr4 17850166 17851386 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1381 46 405 C2C2-Dof Transcription Factor Family AT5G39660 36.275 6.69e-56 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aed4g1381 zf-Dof 2.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1381 - - gmx:102664782 586.645