Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1378 ATGTCTTCATTGGAAATACTTAACATTAGCTCAAATCACTTCAATGGAGCCATCCCATCTCAGCTTTCACTTCTGAGGAACCTTCAGTCAGTGGTGCTTGATGACAACTACTTCAATGGTGAAATTCCCAACTGGGTAGGCTCACTTCAAGGTTTGGCTGTGCTTAGTATGAGGAAAAACTGGCTTAGTGGGAGCTTTCCAACTTCATTGAATGCTCTTCATACCTTGAGAGTGTTGGATCTATCAAATAATCAGTTATCTGGGGAGCTTCCTCATCTTAAGAATTTGGCAAACCTTCAAGTTCTTAACTTGGAAAACAACACATTTGGACCTCATTTTCCTTCTCTCCCAACCAACCGAGTTCATAAGAAACAAGTTGTGAAAACACCTTCAAAGTCCACTTTGGAGCATGTTATCAGCCAGGAACAAAATGAAGATCATGAAGTGAAAACCACTACAAGGTCCATAATGGAGCATATCATCAAAAGGGTTCCTGACAAACGTGCTGTGGAAACACTAACAAGATCCATAAAGGAGCATGTCATGAGCCGAGTTTTTAAAGGGGTGCTCTCTGATAGAATGCACATTGCTATTAGAGGATCTTCTGGGGAAAAGCTTTCTTGGACTCAGAGAATAACAGCTGCAATTGGAGTGATCAGCAATGGTATTTCCTCTGGCTTAAAAGGAAATGTCCAAGCAAGGATCAAGGATGCAGACAAGAATGATGTCTATGATATTGGGTTACATGTAAGCCTCAAAACTGATGACATAGCTAGAAGAAGCATTGTTGACCCAGCAGTTCACAAGGAATGTTCAGATGAATCACTGATGACAATGATGGAGATATGTGTAAGGTGTCTCTCTGGTGACCCAACTGAAAGGCCTTCTGTGGAAGATATTCTCTGGAATCTGCAGTTTGCAGCACAAGTTCAGAATTCATGGAGAAGAGACTCAAGTGATCACAGTTATAACTCGCCTGCACCATCCTCCAGGGAGACATGA 1002 0.4182 MSSLEILNISSNHFNGAIPSQLSLLRNLQSVVLDDNYFNGEIPNWVGSLQGLAVLSMRKNWLSGSFPTSLNALHTLRVLDLSNNQLSGELPHLKNLANLQVLNLENNTFGPHFPSLPTNRVHKKQVVKTPSKSTLEHVISQEQNEDHEVKTTTRSIMEHIIKRVPDKRAVETLTRSIKEHVMSRVFKGVLSDRMHIAIRGSSGEKLSWTQRITAAIGVISNGISSGLKGNVQARIKDADKNDVYDIGLHVSLKTDDIARRSIVDPAVHKECSDESLMTMMEICVRCLSGDPTERPSVEDILWNLQFAAQVQNSWRRDSSDHSYNSPAPSSRET 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1378 333 Pfam Leucine rich repeat 26 86 IPR001611 GO:0005515
Aed4g1378 333 Gene3D Transferase(Phosphotransferase) domain 1 236 326 - -
Aed4g1378 333 Gene3D Ribonuclease Inhibitor 1 138 IPR032675 -
Aed4g1378 333 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 2 119 - -
Aed4g1378 333 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 254 319 - -
Aed4g1378 333 SUPERFAMILY RNI-like 2 114 - -
Aed4g1378 333 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 2 119 - -
Aed4g1378 333 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 254 319 - -
Aed4g1378 333 PRINTS Leucine-rich repeat signature 76 89 - -
Aed4g1378 333 PRINTS Leucine-rich repeat signature 96 109 - -
Aed4g1378 333 ProSiteProfiles Leucine-rich repeat profile. 75 97 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1378 Aed-Chr4 17812897 17818591 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1378 151 330 Miscellaneous Gene Families AT3G03770 34.221 9.19e-34 129