Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1376 ATGCGCAATTCAAAATCAGCAGCGTCTCTTCTTCTCATAGCACGTGCCAAGCCCCTCCAACTTCACCATCAGCATCACGTGCGTCACCGCAACCGCGTCGTCTCTTCTTCTCCTTTTTCTTCTGCAACTTCAATCTCTCACTTCAGGTTTCACCCTTGGCTCTCTTCTTCCCTGTGCAACGCGAAATCATTAATCTCCACGCGCCTCGTCTCCAGCTACTACTCTCTCGAACAGTTCTCCGATGACGAATACGACTGCGACTTCGAGAATCATCAGGCATCATCTACGGTGGCCAATGTGGATGAGTGGAAATGGAAACTCAGCATGCTGTTACGCACGAAAAGGACCAGGAGATTAGACAGAAAAGATAGGAGGGACTACGAACAGATAGCTAACCTTGCCAAAAGAATGGGGCTTTACAGTGAGTTGTTTGGAAAAGTGGTTGTTGCAAGCAAGGTTCCTCTTCCTAACTACCGTCCTGATTTGGATGACAAACGTCCACAAAGAGAGGTGGTGATTCCACTAAGCTTGCAAAGGAGGGTTGAGGGTTTGTTGCAGGAATACCTTGATAGACTTCAGCTCAATTCTGCAAAGACAACTGACAGCCTGGATGATGTGAACTCCACTAATCAAGTTAAAGATATAGACATGGATGAAAATGCCGATTCATTTGTGGATGAATCTGTTATGGAAAAAGTTCTCCAGAAGAGGAGTTTGAGGATGCGTAATATGCAAAGAGCTTGGCAGGAATCACCTGAGGGCAGGAAGATGCTGGAATTCCAGAGGTCTCTACCATCATTCAAGGAGAAGCAAGGTTTACTTCAAGCTATAGCACATAATCAGGTGATAGTTATATCTGGAGAGACTGGCTGTGGTAAAACCACTCAACTTCCTCAGTATGTATTAGAATCAGAGATTGAGTCTGGTCGTGGAGCATTTTGTAGCATTATTTGCACACAGCCTCGAAGGATCTCTGCTATGGCAGTGGCAGAGAGAGTGTCAGCAGAGCGAGGAGAGCCTCTTGGTGAAACAGTTGGCTTCAAAGTTCGATTAGAAGGAATGAAAGGGAAAAACACCCATCTGCTCTTTTGTACTAGTGGTATATTACTTAGAAGGTTGTTGAGTGATCGAAACCTGAATGGTATAACCCATGTTTTTGTGGATGAAATTCATGAAAGAGGCATGAATGAAGACTTCTTACTGATTGTGTTAAAGGATCTGCTTCCCCGTCGTCGGGATTTAAGATTGGTTTTAATGAGTGCCACCTTGAATGCTGAGCTTTTTTCGATTTTTTTTGGAGGTGCTCCTACATTTCATATTCCGGGCTTCACCTATCCAGTTAGAGCACACTTTTTAGAAGATATTTTGGAAATGACTGGATATAAATTGTCTTCCTTCAACCAAATTGATGATTATGGACAAGAGAAAATGTGGAAGACACAAAAGCAACTAGCACCACGGAAGAGGAAAAACCAGATCACTGCTCTTGTTGAGGATGCTCTTTCTAAATCAAGCTTTGAGAACTATAGCTCCAAGGCACGTGATTCGTTAGCATCTTGGGCACCTGACTGCATTGGGTTTAATCTTATTGAGGCTGTTCTATGCCATATATGTCGGAAGGAACGGCCAGGTGCTGTCTTAGTATTTATGACTGGGTGGGAGGATATAAGCTCTTTAAGAGATCAGCTTAAAGCACATCCTCTTTTAGGTGATCCCAATAGGGTTCTTCTTCAAACATGTCATGGTTCAATGGCAACCACAGAACAGAAACTCATATTTGAGAAACCACCTCCAAATATAAGGAAAGTGATACTTGCTACAAATATGGCTGAGGCAAGTATTACAATCAATGACGTAGTTTTTGTGGTTGATTGTGGAAAAGCAAAAGAGACCACTTATGATGCTTTGAATAACACGCCATGTCTTCTACCTTCTTGGATATCTCAAGCATCTGCACGTCGTGTGCAGCCAGGAGAATGTTACCACCTTTACCCCAAATGTGTTTATGATGCCTTTTCTGAATATCAACTTCCTGAACTACTGAGAACACCTTTGAACTCTCTTTGCTTGCAAATAAAAAGTTTGCAGGTTGAGAGCATAGGAGAGTTCTTATCAGCAGCTTTACAGGCACCAGAGCCACGGACTGTTCAAAATGCTATTGATTTTCTCAAGATGATTGGAGCATTAGATGAACAAGAAAATCTTACGAATCTTGGGAAGTTTCTCTCTATGCTTCCTGTGGATCCCAAGCTGGGAAAAATGTTAATAATGGGAGCTATATTTCGATGCTTTGATCCTGTTCTAACAATAGTTGCTGGCCTTAGTGTCAGGGATCCTTTTCTTTTGCCCCAAGATAAGAGGGATTTAGCAGGGACAGCAAAGTCTAGGTTTTCTGCTAAAGATTACAGTGATCATATGGCTCTTGTTCGAGCATATGAAGGATGGAAAGATGCAGAAAGAGAAGGGTCGGCTTACGAATACTGCTGGAGAAATTTCCTTTCAGCCCAAACTCTTCAGGCTATTCATTCACTTCGGAAGCAGTTTAGCTTCATCTTGAGAGATGCCGGCTTGGTAGATGCAGATGCAAGCATCATTAACAAATTGAGTCACAATCAGTCTCTTGTGCGTGCAGTCATTTGTTCTGGACTCTTTCCTGGCATAGCATCAGTGGTGCACAGGGAGACATCCATGTCATTTAAAACAATGGATGATGGCCAGAATTCAGTGAATGCACGTTACCAGACCATTCCTTACCCATGGTTGGTTTTTGGCGAGAAAGTTAAGGTCAATGCTGTTTTCATCCGTGATTCCACTGGTGTATCTGATTCAACACTTGTCCTTTTTGGTGGTGCTCTAAGTAATGGGATACAGGCTGGGCATCTGAAAATGTTAGATGGTTATGTTGACTTCTTCATGGATCCTAGCTTAGCTGATTGCTGTTTGATGCTTAAGGAAGAGCTCAATAAGCTTATCCAGAGGAAGGAGCTGGTTTCAGGGGATCAATGTGAAGGAAGATTTGTATTTGGCCGTGAAAGCCGGAAGCCTAAGGCCTCCAATGATGAAAACAAATTCACAAAAGATGGAACAAACCCCAAGAGCTTGCTGCAGACACTGATGATGCGAGCAGGGCACTCCCCACCAAAATACAAAACAAAACATCTCAAGACAAATGAGTTTAGGGCACTGGTAGAGTTTAAAGGAATGCAATTTGTTGGCAAACCGAAGAGAAACAAGCAACTTGCAGAAAGGGATGCTGCTATAGAGGCATTGGCTTGGTTGACTCACACCTCTGACAATAATAAGCACGAAGATGATAACTCTCCTCCCGATGTCACCGACAACATGCTAAAACTCCTAGGGAAGCGTAGAAAATCAAAGCGAGGCCATGGTTGA 3393 0.4312 MRNSKSAASLLLIARAKPLQLHHQHHVRHRNRVVSSSPFSSATSISHFRFHPWLSSSLCNAKSLISTRLVSSYYSLEQFSDDEYDCDFENHQASSTVANVDEWKWKLSMLLRTKRTRRLDRKDRRDYEQIANLAKRMGLYSELFGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQEYLDRLQLNSAKTTDSLDDVNSTNQVKDIDMDENADSFVDESVMEKVLQKRSLRMRNMQRAWQESPEGRKMLEFQRSLPSFKEKQGLLQAIAHNQVIVISGETGCGKTTQLPQYVLESEIESGRGAFCSIICTQPRRISAMAVAERVSAERGEPLGETVGFKVRLEGMKGKNTHLLFCTSGILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNAELFSIFFGGAPTFHIPGFTYPVRAHFLEDILEMTGYKLSSFNQIDDYGQEKMWKTQKQLAPRKRKNQITALVEDALSKSSFENYSSKARDSLASWAPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWEDISSLRDQLKAHPLLGDPNRVLLQTCHGSMATTEQKLIFEKPPPNIRKVILATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASARRVQPGECYHLYPKCVYDAFSEYQLPELLRTPLNSLCLQIKSLQVESIGEFLSAALQAPEPRTVQNAIDFLKMIGALDEQENLTNLGKFLSMLPVDPKLGKMLIMGAIFRCFDPVLTIVAGLSVRDPFLLPQDKRDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFSFILRDAGLVDADASIINKLSHNQSLVRAVICSGLFPGIASVVHRETSMSFKTMDDGQNSVNARYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSTLVLFGGALSNGIQAGHLKMLDGYVDFFMDPSLADCCLMLKEELNKLIQRKELVSGDQCEGRFVFGRESRKPKASNDENKFTKDGTNPKSLLQTLMMRAGHSPPKYKTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAIEALAWLTHTSDNNKHEDDNSPPDVTDNMLKLLGKRRKSKRGHG 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1376 1130 SMART DRBM_3 1031 1094 IPR014720 -
Aed4g1376 1130 Pfam DEAD/DEAH box helicase 274 425 IPR011545 GO:0003676|GO:0005524
Aed4g1376 1130 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 272 824 IPR027417 -
Aed4g1376 1130 Pfam Helicase conserved C-terminal domain 532 631 IPR001650 -
Aed4g1376 1130 Gene3D - 212 442 IPR027417 -
Aed4g1376 1130 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 529 696 IPR001650 -
Aed4g1376 1130 Gene3D - 698 800 - -
Aed4g1376 1130 MobiDBLite consensus disorder prediction 1012 1027 - -
Aed4g1376 1130 SMART helicmild6 557 656 IPR001650 -
Aed4g1376 1130 Pfam Helicase associated domain (HA2) 719 805 IPR007502 GO:0004386
Aed4g1376 1130 Gene3D - 1010 1095 - -
Aed4g1376 1130 CDD SF2_C_RHA 518 664 - -
Aed4g1376 1130 PANTHER ATP-DEPENDENT RNA HELICASE 75 1024 - -
Aed4g1376 1130 SMART ha2_5 718 809 IPR007502 GO:0004386
Aed4g1376 1130 MobiDBLite consensus disorder prediction 1012 1031 - -
Aed4g1376 1130 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 75 1024 - -
Aed4g1376 1130 Gene3D - 526 674 IPR027417 -
Aed4g1376 1130 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 274 441 IPR014001 -
Aed4g1376 1130 SMART ultradead3 253 455 IPR014001 -
Aed4g1376 1130 Pfam Double-stranded RNA binding motif 1031 1093 IPR014720 -
Aed4g1376 1130 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 875 951 IPR011709 -
Aed4g1376 1130 CDD DEXHc_RHA-like 280 440 - -
Aed4g1376 1130 MobiDBLite consensus disorder prediction 1095 1130 - -
Aed4g1376 1130 SUPERFAMILY dsRNA-binding domain-like 1024 1096 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1376 Aed-Chr4 17782334 17796753 Transposed