Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1321 ATGGAAAACCACATCTACGCTGCCTCCTCTTACAGCCCTTCCACCAACTACAGATCATTCCGTGACCCCGACACCATGTTCCTCTCCCACCACCACCACCGCTCCGACGCCGCCTCCGCCGCCGCCGCAGCTTCCCTCCGTTTTGCTGCCGCCGTCGACGCCGACATTGCCCCGCCCGGCGTCACCTCCCGAATCGCCTCTTCCACCGCCGCCGCGAATTTCCTCTCCTCCTGGCCCCCTGCCGCCGCCGCCGCCGCTTCCGCTCTCGACCTCAAACGCTCCTCCGACGCTCTCTACCATCCAACCATTTTGGGTACAATTGGGCAAAGTGAAGCTTGGTATTCTACAAACCCACTGGCCAAGCGCACTAGATATGAAAGTGCTTCCACTATGTCCATATATCCACAGAGGCCAGGAGAGAAGGATTGTGCCCACTATATGCTCACAAGAACCTGTAAGTTTGGAGATAGCTGCAAGTTTGACCATCCTGTTTGGGTTCCAGAGGGTGGAATCCCGGATTGGAAAGAGGTTCCAAATGTTGTTACAAGTGAAACTCCTCCTGAGAGACCAGGGGAACCAGATTGTCCGTACTTTCTGAAAACTCAAAGATGCAAGTTTGGTTCAAAGTGCAAATTTAATCATCCCCAGGTTTCCTCTGAAAATGCTGATGTTTCTTCTGGCTTACCTGAGAGGCCATCTGAGCCCCCTTGCACGGAGATGCACAGGCAATTACCAATTAATCCACCCATTGCTGGATTAGGCACCTCTATTTTGCCATCCTCAGCTGCTAATCTGAATATCGGACTTCTTAATCCAGCTGTTTCTGTTTATCAAGCTTTTGACCCAAGGCTGTCAAATCCAATGTCTCAGGTGGGAATTGCAGAATCTCTCTATCCTCAGCGACCTGGACAGATTGAATGCGATTTTTATATGAAAACTGGCGAGTGTAAATTTGGGGAAAGATGCAAGTACCATCACCCAATTGATCGCTCAGCACCATCAATGTCAAAGCAGGCTACTGTTAAACTCACTCCTGCAGGATTACCAAGAAGAGAGGGTGCTGTTATCTGTCCATATTATTTGAAAACTGGAACATGCAAGTTTGGTGCAACCTGCAAGTTTGACCACCCACCACCTGGAGAAGTTATGGAGATGGCAAAATCACAAGGAACATCTGCCTATGGAGAAGAAGCAGAAGGTGATGAAATCGAGACTTTTGCTCCAGATCAGCATTGA 1236 0.5 MENHIYAASSYSPSTNYRSFRDPDTMFLSHHHHRSDAASAAAAASLRFAAAVDADIAPPGVTSRIASSTAAANFLSSWPPAAAAAASALDLKRSSDALYHPTILGTIGQSEAWYSTNPLAKRTRYESASTMSIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPVWVPEGGIPDWKEVPNVVTSETPPERPGEPDCPYFLKTQRCKFGSKCKFNHPQVSSENADVSSGLPERPSEPPCTEMHRQLPINPPIAGLGTSILPSSAANLNIGLLNPAVSVYQAFDPRLSNPMSQVGIAESLYPQRPGQIECDFYMKTGECKFGERCKYHHPIDRSAPSMSKQATVKLTPAGLPRREGAVICPYYLKTGTCKFGATCKFDHPPPGEVMEMAKSQGTSAYGEEAEGDEIETFAPDQH 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1321 411 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 254 391 - -
Aed4g1321 411 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 66 238 - -
Aed4g1321 411 MobiDBLite consensus disorder prediction 216 239 - -
Aed4g1321 411 MobiDBLite consensus disorder prediction 387 411 - -
Aed4g1321 411 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 304 327 IPR000571 GO:0046872
Aed4g1321 411 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 163 IPR000571 GO:0046872
Aed4g1321 411 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 355 378 IPR000571 GO:0046872
Aed4g1321 411 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 191 216 IPR000571 GO:0046872
Aed4g1321 411 PANTHER CCCH ZINC FINGER/TIS11-RELATED 66 238 IPR045877 GO:0003729
Aed4g1321 411 ProSiteProfiles Zinc finger C3H1-type profile. 351 379 IPR000571 GO:0046872
Aed4g1321 411 PANTHER CCCH ZINC FINGER/TIS11-RELATED 254 391 IPR045877 GO:0003729
Aed4g1321 411 SUPERFAMILY CCCH zinc finger 194 216 IPR036855 GO:0046872
Aed4g1321 411 ProSiteProfiles Zinc finger C3H1-type profile. 137 165 IPR000571 GO:0046872
Aed4g1321 411 Gene3D - 92 174 - -
Aed4g1321 411 Gene3D - 175 224 - -
Aed4g1321 411 ProSiteProfiles Zinc finger C3H1-type profile. 301 329 IPR000571 GO:0046872
Aed4g1321 411 SUPERFAMILY CCCH zinc finger 355 378 IPR036855 GO:0046872
Aed4g1321 411 SMART c3hfinal6 301 328 IPR000571 GO:0046872
Aed4g1321 411 SMART c3hfinal6 189 216 IPR000571 GO:0046872
Aed4g1321 411 SMART c3hfinal6 351 378 IPR000571 GO:0046872
Aed4g1321 411 SMART c3hfinal6 137 164 IPR000571 GO:0046872
Aed4g1321 411 SUPERFAMILY CCCH zinc finger 138 164 IPR036855 GO:0046872
Aed4g1321 411 Gene3D - 300 393 - -
Aed4g1321 411 ProSiteProfiles Zinc finger C3H1-type profile. 189 217 IPR000571 GO:0046872
Aed4g1321 411 SUPERFAMILY CCCH zinc finger 304 329 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1321 Aed-Chr4 15865175 15873552 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1321 335 406 C2H2 Transcription Factor Family AT3G02830 31.944 7.90e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed4g1321 zf-CCCH 1.2e-10 CL0537