Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1316 ATGGATCATCATGCTTGTGCAAATTCATCAAATAAGTTAGAAAGTCAGGTCAAAAAGGGAAACCAAGACACAAATGATGTCTCCACAATTGACAACAACACAACTAGTGGAGCAGGAGAAACAGACCAGGTTATTAAAAACAATGCAAAGGTGGCAAGTAAACCAACATCATCTAAGCCTTACAATTTAGAAAACCCTATTAAGAACATTTCTGATTTTTCCACTACGCAACAACAAAACCCAATTCCAAGTCCAAGAACAATGCCTTCAAATTCCAACACTTCAACCACCTCATCATGTGATACAAGAGAGTTTTCTATGCTTGCAAAAAGCACCAATAACAATCAAGGTCAAATTAGAAGTGGTGGTAGCTCTCGTAGTGATAGTTTAGAGAGCACTAGTGGTGCACCTATTAAACCGCACACAGGAGGTGATGTGAGGTGGGATGCAATTAACATGGTTTCTAGGGGAAATGGTCTTAATTTGAGTCATTTCAAGCTTCTAAAGCGTGTTGGTTATGGAGACATTGGAAGTGTGTACCTTGTGGCACTTAAAGGGAGCAAGGCATTCTTTGCCATGAAAGTAATGGATAAAGCATCACTTGCAAGTAGAAACAAGCTTTTGAGAGCACAAACAGAAAGAGAGATTCTTGGACTTCTTGACCACCCTTTTTTACCAAATTTATATTCTTATTTTGAGACTGAGAAGTACTATTGTTTGGTCATGGAGTTTTGTAGTAGTGGTAGTCTACATGCTCTTCGATTGAAGCAACCTAACAAACATTTCACTGAAGATGCTGCACGGTTTTATTGTTCAGAAATATTGTTAGCTTTGGAATACTTGCACATGCTAGGCATTGTGTATAGAGACTTAAAACCAGAGAATGTTCTAGTTCGAGATGAAGGTCACATAATGTTATCAGATTTTGACCTATCCCTACGTTGCTCTGTGAATCCAACACTTGTGAAGTCATCATCAGCACATGAACAAAGCAACAACAACAATAATCCATCTGGGGGAAGCATCAACATTTTGAATGACGATCATAATCAAGTAGTACAAGGTTGCATACACCCTTCAAGTTTCTTCTTCCCACGGATCTTGCCTTCAAAGAAGAACAGAAAGTCAAAGTCAGATTTTGGGCTTATGGTTGGAGGGTGCCTCCCAGAACTAATGGCAGAGCCTACAAACGTGAGATCAATGTCCTTTGTAGGGACACACGAGTATCTCGCGCCAGAGATTATCCGCGGTGAGGGACACGGTAGCGCAGTGGATTGGTGGACATTTGGGATCTTCCTCTATGAGCTTCTGCATGGGATAACACCTTTCAAAGGTGCTGGAAACAAAGCCACACTCTATAATGTTGTCGGACAGCCCTTAAAGTTCCCAGAAAAACCACACGTTAGTAACGTTGCGAGAGACCTTATCAAAGGGTTGTTGGTGAAAGAGCCTCAGAAACGATTTGCTTATATAAGAGGTGCCACTGAAATCAAACAACACCCTTTTTTTAATGGGGTGAATTGGGCTCTAGTTAGAAGCACTACACCTCCTATTATACCTGAACCTTTAGATTTTTCTAAGTATGCTAACAAAGGAAATACCCCACCAATGGACAAGAAGATTGCGGATATTGTTGCAAGTGATCAAAATAGACGTGCACAACCTAATTCTTTTAATTATGAAGATTTTGAGTATTTTTAG 1701 0.4004 MDHHACANSSNKLESQVKKGNQDTNDVSTIDNNTTSGAGETDQVIKNNAKVASKPTSSKPYNLENPIKNISDFSTTQQQNPIPSPRTMPSNSNTSTTSSCDTREFSMLAKSTNNNQGQIRSGGSSRSDSLESTSGAPIKPHTGGDVRWDAINMVSRGNGLNLSHFKLLKRVGYGDIGSVYLVALKGSKAFFAMKVMDKASLASRNKLLRAQTEREILGLLDHPFLPNLYSYFETEKYYCLVMEFCSSGSLHALRLKQPNKHFTEDAARFYCSEILLALEYLHMLGIVYRDLKPENVLVRDEGHIMLSDFDLSLRCSVNPTLVKSSSAHEQSNNNNNPSGGSINILNDDHNQVVQGCIHPSSFFFPRILPSKKNRKSKSDFGLMVGGCLPELMAEPTNVRSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGIFLYELLHGITPFKGAGNKATLYNVVGQPLKFPEKPHVSNVARDLIKGLLVKEPQKRFAYIRGATEIKQHPFFNGVNWALVRSTTPPIIPEPLDFSKYANKGNTPPMDKKIADIVASDQNRRAQPNSFNYEDFEYF 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1316 566 ProSiteProfiles AGC-kinase C-terminal domain profile. 504 566 IPR000961 GO:0004674|GO:0005524|GO:0006468
Aed4g1316 566 ProSitePatterns Serine/Threonine protein kinases active-site signature. 286 298 IPR008271 GO:0004672|GO:0006468
Aed4g1316 566 ProSiteProfiles Protein kinase domain profile. 165 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g1316 566 Gene3D Phosphorylase Kinase; domain 1 163 244 - -
Aed4g1316 566 SMART serkin_6 165 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g1316 566 Gene3D Transferase(Phosphotransferase) domain 1 379 521 - -
Aed4g1316 566 PANTHER SERINE/THREONINE-PROTEIN KINASE AGC1-5 14 566 - -
Aed4g1316 566 MobiDBLite consensus disorder prediction 324 344 - -
Aed4g1316 566 Gene3D Transferase(Phosphotransferase) domain 1 245 314 - -
Aed4g1316 566 Pfam Protein kinase domain 397 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g1316 566 Pfam Protein kinase domain 166 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g1316 566 SUPERFAMILY Protein kinase-like (PK-like) 162 529 IPR011009 -
Aed4g1316 566 PANTHER FLIPPASE KINASE 1-RELATED 14 566 - -
Aed4g1316 566 MobiDBLite consensus disorder prediction 1 142 - -
Aed4g1316 566 MobiDBLite consensus disorder prediction 8 136 - -
Aed4g1316 566 CDD STKc_phototropin_like 163 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1316 Aed-Chr4 15739962 15743192 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1316 130 531 AGC Kinase Gene Family AT1G79250 76.485 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Aed4g1316 Pkinase 1.8e-36 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0199 1 3460738 3466047 Aed4g1316 4 15739962 15743192 PCT