Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed4g1296 | ATGTCACAACCATCTCCTCCTCCTCCGCCGCTGGCACCACCACCGACACCGCCGCCGCCGACTCCACCACCTCCTCAGCTGGCCGAGAGCGTACGCGTGCGCTGCGCCGGCTGCCGCATGATCCTCACTGTGGCGCCCGGCCTCACGGAGTTCGCGTGCCCTACCTGCCGAATGCCGCAGATGCTTCCGCCGGAGCTCATGCCCAAGGTGGAGGCGACGGCGGCGGCGGCCAACACGGCGGTAGCTCCGCCTCCTCCTACGTCCGTTGCGGCATCGCAGCCGTCGCAGGCACCGGCGCACGGCATTGATCCCTCTAAGATCCAGCTTCCCTGCGCCTCTTGCAAGGCCATTCTTAACGTCCCCCACGGCCTTGCACGCTTCGCTTGCCCTCAGTGCGGGGTTGACCTCGCGGTCGATGTCTCCAAAGTCAAGCAGTTCTTCCCCGCGCCCGAAGAAATTAACGAGGTTGCTGTTGAAGTGGAGCGGGACGAAGATGAAGGTGGCATGGTTGGAGAAACATTTACAGATTATCGGCCGCCAAAAGTATCTATTGGACCTCCGCATCCAGATCCTGTTGTGGAGACATCTTCCTTGTCTGCAGTGCAGCCTCCTGAGCCAGTTTATGATCCCAAAGTTAAAGATGATTTGGAAAGTTCAAAGGCTTTGTCTTGCTTGCAAATTGAGACGTTGGTCTATGCTTGTCAGAGACACCTTCAACACCTCCCAAATGGAGCTAGGGCAGGATTCTTTGTTGGAGATGGAGCTGGTGTAGGTAAAGGTCGAACTATTGCAGGACTGATTTGGGAGAACTGGCATCACTATAGGAGGAAAGCATTGTGGATTTCTGTTGGTTCAGACTTGAAGTTTGATGCTAGAAGAGACTTGGATGATGTGGGTGCAACATGCATTGAAGTGCATGCTTTGAATAAACTTCCTTATTCAAAGCTTGATTCAAAGTCTGTTGGGGTCAGGGAGGGGGTTGTTTTCTCAACATACAATAGCCTCATAGCATCCTCTGAGAGAGGTCGTTCTCGTCTCCAGCAGCTTGTACAGTGGTGTGGTCCAGGGTTTGATGGTCTTATAATTTTTGATGAGTGTCACAAAGCAAAAAATTTGGTCCCTGAATCTGGTAGTCAGCCAACACGGACTGGAGAAGCAGTGCTTGATATCCAGGAAAAACTACCTGAAGCTCGTGTTGTTTATTGCTCAGCGACTGGAGCATCTGAACCTCGCAATATGGGTTATATGGTTCGACTTGGTCTTTGGGGAGGCGGGACTTCATTCTCTGATTTCCGTGAATTTCTAGGTGCTCTTGACAGAGGGGGTGTTGGAGCTCTTGAATTAGTTGCCATGGACATGAAAGCAAGGGGTATGTATTTATGTCGGACACTTAGCTATGAGGGTGCAGAGTTTGAAGTTATCGAAGCACCATTAGAAGATAAAATGATGGAAATGTATAAAAAGGCAGCAGAATTTTGGGCTGAATTACGAGTAGAATTGCTCTCAGCCAGTGCCTTCCTAAATGATAAACCAAATTCTAGTCAACTATGGAGATTATACTGGGCAAGCCACCAGCGTTTCTTTAGACACATGTGTATGTCTGCTAAAGTCCCTGCTACTGTGAAACTAGCGAAGCAAGCATTAGTTGATGAAAAATGTGTAGTCATTGGTCTTCAGAGTACTGGCGAAGCAAGGACAGAGGAAGCTGTGACAAAATATGGTTCTGAACTTGATGACTTTGTTTCTGGACCTCGAGAATTACTGCTTAAATTTGTGGAAGAAAATTACCCCTTACCGGAAAAACCTGAACTTCTCCCAGGAGAGGATGGGGTAAAAGAACTCCAACGGAAGAGGCACTCTGCAACTCCTGGTGTTTCAGTGAAAGGAAGGGTCAGAAAAGTAGCCAAGTGGCAACCTCCTAGTGATGCTGAAAGTGATGAAGAATCTGATAGTGACTCAGCCGTTGAATCAACTGACTCTGATGATGAGTTTCAAATATGTGAAATTTGCACTACAGAGGAGGAAAGGAAAAAAATGCTACAGTGTTCTTGCTGCGGTAAATTAGTCCATTCCACATGCCTGATGCCACCAATTGGTGATATCGTTCCTGAAGAGTGGTCATGCCATTTGTGCAAGGAGAAAACAGATGAATATCTTCTAGCAAGACAGGCCTACATAGCCGAACTTCAGAAGAGGTATGATGCAGCCTTGGAACGCAAAACAAAAATACTAGAGATAATTCGTTCTTTGGATCTTCCAAATAATCCTATGGATGATATTGTTGACCAGCTAGGAGGTCCTGACAAAGTTGCAGAAATGACAGGAAGAAGAGGCATGCTTGTGAGGGCTGCTACTGGAAAGGGTGTAACTTATCAGGCTCGTAATACAAAAGATGTCTCTATGGAAATGGTTAACATGCATGAAAAGCAGCTCTTTATGGATGGTAAAAAGTTTGTTGCTATTATCTCTGAAGCTGGATCAGCTGGTGTTTCTTTGCAGGCAGATAGACGAGCTGCAAATCAGAAAAGAAGGGTTCATTTAACTCTAGAACTTCCATGGAGTGCTGACCGGGCAATCCAGCAGTTTGGAAGAACTCATCGATCAAATCAAGCTTCAGCACCAGAATACAGGGCTGGACCTTCATTAAGTGCTTATAATTATGATAGTGCATATGGAAAGAAGGCTTTGATGATTATGTACAAGGGAATAATGGAGCAGGATTCTCTGCCTGTGGTACCTCCGGGATGTTCATCTCAAAGACCAGATACAATTCAAGATTTTATTGTGCAGGCAAAAGCTGCTCTTGTATCTGTTGGGATAATAAGGGACACAGTTCTTGGTAATGGTAAATCTGGTCGTATTATTGATTCAGATATGCATGAAGTTGGACGGTTCCTCAACCGGATTCTGGGACTCCCTCCTGATATTCAGAATGGGCTATTTGAGTTATTTGTGAGTATCTTGGATCTTCTTGTTCGGAATGCTCGCATTGAAGGTAACCTTGACACGGGCATTGTTGACTTGAAAGCTAATGTAATTGAGCTACAAGGGACTCCAAAGACGGTTCATGTTGATCAATTGACTGGGGCCTCAACAGTTCTGTTTACATTCATCTTAGATCGTGGGATCACATGGGAGTTGGCAAGTACAATGCTGAATGAAAAGCAGAAGGATGGGCTTGGTTCAGCCAATGATGGCTTCTATGAGTCCAAGAGGGAGTGGTTGGGAAGACGTCATTTCATTTTAGCATTTGAAAGTTCCACTTCAGGTATGTATAAAACAGTTCGCCCCCCTGTTGGAGAATCGAACAGGGAGATGCCTCTTTCTGAATTAAAAAGCAAATATAGAAAAATTTCATCTTTAGAGAAGGCTCAGTCTGGTTGGGAAGAAGAATATGAAGGTTCATCTAAACAGTGCATGCATGGTCCCAATTGTAAGATTGGAAACTTTTGTACAGTTGGTAGAAGACTACAAGAAGTAAATGTCTTGGGCGGCCTCATCCTTCCTGTTTGGGGAGCCGTAGAAAAGGCCCTTTCAAAGCAGTCCCGCCTAAGCCATAGGAGGTTACGTGTTGTACGCATTGAAACTACCGTGGATACGCAACGTATTGTTGGGCTTCTTGTTCCTAATGCAGCAGTGGAAAATGTGCTTCAAGGTTTAGCGTGGGTTCAAGAAATTGATGATTGA | 3687 | 0.4622 | MSQPSPPPPPLAPPPTPPPPTPPPPQLAESVRVRCAGCRMILTVAPGLTEFACPTCRMPQMLPPELMPKVEATAAAANTAVAPPPPTSVAASQPSQAPAHGIDPSKIQLPCASCKAILNVPHGLARFACPQCGVDLAVDVSKVKQFFPAPEEINEVAVEVERDEDEGGMVGETFTDYRPPKVSIGPPHPDPVVETSSLSAVQPPEPVYDPKVKDDLESSKALSCLQIETLVYACQRHLQHLPNGARAGFFVGDGAGVGKGRTIAGLIWENWHHYRRKALWISVGSDLKFDARRDLDDVGATCIEVHALNKLPYSKLDSKSVGVREGVVFSTYNSLIASSERGRSRLQQLVQWCGPGFDGLIIFDECHKAKNLVPESGSQPTRTGEAVLDIQEKLPEARVVYCSATGASEPRNMGYMVRLGLWGGGTSFSDFREFLGALDRGGVGALELVAMDMKARGMYLCRTLSYEGAEFEVIEAPLEDKMMEMYKKAAEFWAELRVELLSASAFLNDKPNSSQLWRLYWASHQRFFRHMCMSAKVPATVKLAKQALVDEKCVVIGLQSTGEARTEEAVTKYGSELDDFVSGPRELLLKFVEENYPLPEKPELLPGEDGVKELQRKRHSATPGVSVKGRVRKVAKWQPPSDAESDEESDSDSAVESTDSDDEFQICEICTTEEERKKMLQCSCCGKLVHSTCLMPPIGDIVPEEWSCHLCKEKTDEYLLARQAYIAELQKRYDAALERKTKILEIIRSLDLPNNPMDDIVDQLGGPDKVAEMTGRRGMLVRAATGKGVTYQARNTKDVSMEMVNMHEKQLFMDGKKFVAIISEAGSAGVSLQADRRAANQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRAGPSLSAYNYDSAYGKKALMIMYKGIMEQDSLPVVPPGCSSQRPDTIQDFIVQAKAALVSVGIIRDTVLGNGKSGRIIDSDMHEVGRFLNRILGLPPDIQNGLFELFVSILDLLVRNARIEGNLDTGIVDLKANVIELQGTPKTVHVDQLTGASTVLFTFILDRGITWELASTMLNEKQKDGLGSANDGFYESKREWLGRRHFILAFESSTSGMYKTVRPPVGESNREMPLSELKSKYRKISSLEKAQSGWEEEYEGSSKQCMHGPNCKIGNFCTVGRRLQEVNVLGGLILPVWGAVEKALSKQSRLSHRRLRVVRIETTVDTQRIVGLLVPNAAVENVLQGLAWVQEIDD | 1228 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed4g1296 | 1228 | SMART | PHD_3 | 666 | 712 | IPR001965 | - | |
| Aed4g1296 | 1228 | MobiDBLite | consensus disorder prediction | 80 | 101 | - | - | |
| Aed4g1296 | 1228 | ProSiteProfiles | Zinc finger PHD-type profile. | 664 | 714 | IPR019787 | - | |
| Aed4g1296 | 1228 | ProSitePatterns | Zinc finger PHD-type signature. | 667 | 711 | IPR019786 | - | |
| Aed4g1296 | 1228 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Aed4g1296 | 1228 | PANTHER | OS08G0223700 PROTEIN | 877 | 1228 | - | - | |
| Aed4g1296 | 1228 | PANTHER | STRAWBERRY NOTCH-RELATED | 28 | 147 | IPR026741 | GO:0006355 | |
| Aed4g1296 | 1228 | PANTHER | OS08G0223700 PROTEIN | 149 | 877 | - | - | |
| Aed4g1296 | 1228 | PANTHER | OS08G0223700 PROTEIN | 28 | 147 | - | - | |
| Aed4g1296 | 1228 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 197 | 430 | IPR027417 | - | |
| Aed4g1296 | 1228 | MobiDBLite | consensus disorder prediction | 644 | 660 | - | - | |
| Aed4g1296 | 1228 | SUPERFAMILY | FYVE/PHD zinc finger | 657 | 716 | IPR011011 | - | |
| Aed4g1296 | 1228 | Gene3D | - | 217 | 417 | IPR027417 | - | |
| Aed4g1296 | 1228 | Pfam | P-loop containing NTP hydrolase pore-1 | 187 | 487 | IPR039187 | - | |
| Aed4g1296 | 1228 | PANTHER | STRAWBERRY NOTCH-RELATED | 149 | 877 | IPR026741 | GO:0006355 | |
| Aed4g1296 | 1228 | MobiDBLite | consensus disorder prediction | 631 | 660 | - | - | |
| Aed4g1296 | 1228 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Aed4g1296 | 1228 | Pfam | PHD-finger | 666 | 714 | IPR019787 | - | |
| Aed4g1296 | 1228 | Pfam | C-terminal domain on Strawberry notch homologue | 755 | 877 | IPR026937 | - | |
| Aed4g1296 | 1228 | Pfam | C-terminal domain on Strawberry notch homologue | 879 | 1007 | IPR026937 | - | |
| Aed4g1296 | 1228 | PANTHER | STRAWBERRY NOTCH-RELATED | 877 | 1228 | IPR026741 | GO:0006355 | |
| Aed4g1296 | 1228 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 614 | 723 | IPR013083 | - |
Transcription factors information