Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed4g1293 | ATGGGAAACTCGCAAGCTAAAAAGCGTGAAACTCAAATTTCCAGAAACGCTGATCTGAGCGTTCAGTCTCCGATAAGAACCTGGTCACCGCCGCCGCAAGAACCACCGCAAGAACCACCACCAGAACCACCACCAGCTATGTCTTTGAATAAGCATCATCAAGGTTCGGGGAAACAGCTATATGCAAAAGAGAAATATGCTCTGATTCCTGATAACTTCACTACCCTTGAACAGGTTACAATTGCCTTGAGGAACGAAGGTTTAGAATCATCAAATCTTGTCCTTGGAATTGATTTCACAAAAAGCAATGAATGGACTGGAAGTGTCTCATTCAATAATAGAAGCCTTCATGCTATTGGAAGTACTCCTAACCCCTATGAGAAAGCCATCACTATCATTGGCAAGTCTCTGGCTCCCTTTGATGATGACAACTTGATTCCTTGTTTTGGCTTTGGACCAACATCTTATGCTCCAGTGATTGAGGCTGCAATAGACATAGTTGAGAAAAGCCATGGCCAATTCCATGTGTTAGTTATTGTTGCAGATGGCCAGGTTACAACAAATGCTGCCTCTGAAGATGGAGAACTAAGTCCACAAGAAGCAAGGACAATCAAAGCAATAGCTGATGCAAGTTCATATCCCCTTTCTATTGTTCTGGTTGGAGTTGGTGATGGACCTTGGGATGACATGAAGAACCCCTCTGAAAAAGAAGCTGCTTTTGCTTTGGCTGCTCTAATGGAAATACCTTTCCAATATAAAGCAGCCATTGAACTTGGACTACTTGGTCGTGCAACAGGAAGGTCAAATAAAATAATTCCAAGACCTCCTCCAGCTCCATATTCCCGGCTTGTGCCACCAGCTCGTGTTCTGAGCAACATGCCAACTTTCATGGATGATGAGAGAAATCAAATGGCATGTGCTATTTGTCTGACCAATAGAAAAGATTTGGCCTTTGGATGTGGTCACATGACATGTAGAGACTGTGGAACCAGGTTAACCAACTGTCCAATATGTCGTCAGAGGATCACCAATCATCTTAGAGTGTTTTCTAGCTGA | 1056 | 0.4328 | MGNSQAKKRETQISRNADLSVQSPIRTWSPPPQEPPQEPPPEPPPAMSLNKHHQGSGKQLYAKEKYALIPDNFTTLEQVTIALRNEGLESSNLVLGIDFTKSNEWTGSVSFNNRSLHAIGSTPNPYEKAITIIGKSLAPFDDDNLIPCFGFGPTSYAPVIEAAIDIVEKSHGQFHVLVIVADGQVTTNAASEDGELSPQEARTIKAIADASSYPLSIVLVGVGDGPWDDMKNPSEKEAAFALAALMEIPFQYKAAIELGLLGRATGRSNKIIPRPPPAPYSRLVPPARVLSNMPTFMDDERNQMACAICLTNRKDLAFGCGHMTCRDCGTRLTNCPICRQRITNHLRVFSS | 351 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed4g1293 | 351 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 295 | 351 | IPR013083 | - | |
| Aed4g1293 | 351 | PANTHER | COPINE FAMILY PROTEIN 1 | 23 | 152 | - | - | |
| Aed4g1293 | 351 | PANTHER | COPINE FAMILY PROTEIN 1 | 233 | 349 | - | - | |
| Aed4g1293 | 351 | SUPERFAMILY | vWA-like | 92 | 225 | IPR036465 | - | |
| Aed4g1293 | 351 | MobiDBLite | consensus disorder prediction | 28 | 47 | - | - | |
| Aed4g1293 | 351 | Pfam | Zinc finger, C3HC4 type (RING finger) | 303 | 343 | - | - | |
| Aed4g1293 | 351 | ProSiteProfiles | Zinc finger RING-type profile. | 306 | 339 | IPR001841 | - | |
| Aed4g1293 | 351 | SMART | ring_2 | 306 | 338 | IPR001841 | - | |
| Aed4g1293 | 351 | MobiDBLite | consensus disorder prediction | 1 | 56 | - | - | |
| Aed4g1293 | 351 | CDD | RING-HC_RGLG_plant | 306 | 349 | IPR045317 | GO:0061630|GO:0070534 | |
| Aed4g1293 | 351 | Pfam | Copine | 151 | 232 | IPR010734 | - | |
| Aed4g1293 | 351 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RGLG4 | 23 | 152 | - | - | |
| Aed4g1293 | 351 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RGLG4 | 233 | 349 | - | - | |
| Aed4g1293 | 351 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RGLG4 | 152 | 231 | - | - | |
| Aed4g1293 | 351 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Aed4g1293 | 351 | PANTHER | COPINE FAMILY PROTEIN 1 | 152 | 231 | - | - | |
| Aed4g1293 | 351 | SUPERFAMILY | RING/U-box | 300 | 345 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed4g1293 | Aed-Chr4 | 14567348 | 14577357 | Transposed |
Event-related genes