Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1245 ATGGAACTCACCATCCCACACAACCCCAACCCTCTTCTCGTTTCCTCATCACCACCACTCTCTCCAAATCCAAACCCCAATGTCTTCACGTTAACCGCGCCGCGCCGCCGCAGAAACCTCAGGTTTCGGGTTTCGGCCACGGCGGAGCCCGATGGACCGTCGTCGTTGTGGTTGCAATCGCTGCGGCGCGGGTCGCGACGGTTCTGGGTCAAGTTTGGGGAAATGGTGAAGAAGGAGACGGGTCTCGGCTTCGAAAATGGGACTGTGAAGAAGTTTGACAACGAGTTTGATGAATTGCGAAGGTTTGGGTCTCAGTTTATCGATTGGAACCGGTGGGAACGGTGGAAGAATATCAAGGATTGGGAACCTAAGCGAATTGGTGCATTGGTTCTTTACATTTTTGCTGTGGTATGTGCTTGTAGAGGAGTATATGTAACAATTCAAGCACCTTTCCTAAATTGCCAGAAAAAAGAATTGACAGAAGCTTACATGGAATCGTTAATTCCTGAACCATCCCCTACTAACATTAGAAGATTTAAGAAGGGTATGTGGAAGAAGACAATGCCGAAGGGCCTAAAAATGAAAAAGCTTATTGAAAGACCTGATGGAACACTTGTTCATGATACTTCTTATGTTGGAGAGGATGCATGGGAGGATGATCGAGAGGCTCCTGAGGAGCGTGTAAAACAAATTATAGAGGATGATGAAAGGTTAAACAAAGAAGAGAAGAAAGAGTTAACAAAAGGCTTGGGCATTTCAGGTGAAGTTCAAGCTGAGGGCACATGGCGTGAGAGACTTTATAAATGGAGAGAGATCCTTAGTAAAGAATGTTTTAATGAGCAAGTGGATTCCTTAAATGTCAAATATGTAGTTGAATTTGATATGAAAGAGGTTGAAAATAGTCTACGCAAGGATGTGGCAGAAAAAGTGACACCCACTGAGGGTACAAGGGCTCTGTGGATAGCAAAAAGATGGTGGCTCTATCGCCCCAAACTTCCTTATACTTATTTCCTCGAAAAACTCGATAGTTCTGAGGTAGCAGCTGTTGTCTTTACTGAAGACTTGAAAAGATTGTATGTGACGATGAAAGAAGGTTTTCCATTGGAATTTGTTGTTGATATCCCTCTTGATCCGTATATGTTTGAGAATATTACAAGTTCTGGAGTTGAAGTAGATCTCCTTCAGAAGCGACAGATCCATTATTTCATGAAGGTTGTGATTGCATTAGTACCTGGAATACTGATTCTCTGGCTTATAAGGGAGTCTGTAATGCTTCTACACATTACCAACAAGAGGTTTCTTTACAAGAAGTATAATCAACTCTTTGATATGGCTCATGCAGAAAATTTCATTATGCCAGTTGGAGATGTTAGTGAAACAAAATCAATGTACAAAGAAGTTGTGTTGGGGGGTGACGTCTGGGATCTTCTTGATGAGTTAATGATCTATATGGGAAATCCTATGCAATTCTATGAAAGGGATGTGCAGTTTGTTCGGGGTGTTCTACTCTCTGGACCTCCAGGAACAGGAAAAACACTTTTTGCCAGGACACTTGCAAAAGAAAGTGGATTACCTTTTGTATTTGCTTCAGGTGCTGAATTCACTGATAGTGAAAAAAGTGGTGCATCTAGGATCAATGAGATGTTTTCCATTGCTAGGAGAAATGCACCTTGTTTTGTATTTGTGGATGAAATAGACGCTATTGCTGGAAGACATGCTAGGAAAGATCCACGGAGAAGGGCAACTTTTGAGGCTCTTATTGCACAGCTTGATGGGGAGAAGGAGAAAACTGGTGTAGACCGTGTATCCCTCAGACAAGCTATCATATTTATCTGTGCCACAAATAGGCCTGATGAATTAGATCTTGAGTTTGTTCGTGCTGGACGTATTGATCGTCGTCTGCACATTGGTTTGCCTGATATAAAACAGAGAGTTCAAATTTTTGGTGTGCACAGTTCCGGAAAGCAACTTGCGGAGGATGTGAACTTTGAAGAGCTTGTCTTCCGTACTGTTGGATTCTCTGGAGCAGATATAAGAAACCTTGTCAACGAAGCAGCAATAATGTCGGTGAGAAAAGGGCATTCCACAATTTTCCAGAAAGATATTATTGATGTACTAGATAAACAACTGCTTGAGGGTATGGGTGTCCTTCTGACAGAGGAAGAGCAACAAAAATGTGAACAAAGGGTATCTTTTGAAAAGAAGAGACTGCTTGCTGTTCATGAAGCTGGTCATGTAGTGCTAGCTCACTTATTTCCTCGGTTTGACTGGCATGCATTTTCACAGCTCCTGCCTGGTGGTAAGGAAACTGCAATATCTGTATTCTATCCCCGAGAAGATATGGTAGACCAAGGCTATACAACATTTGGTTACATGATGATGCAAATGGTAGTGGCTCATGGTGGTCGATGTGCTGAACGTATTGTATTTGATGATGATATAACTGATGGAGGAAGCGATGATCTTGAAAAGATAACGAAGATTGCTAGGGAGATGGTTATCAGCTCTCAAAATAAAAAGTTGGGGTTAATACCTTTAACAAAAAGGGTTGGCTTAAGTGATCGACCAGACAGCCCAGATGGAGAGTTGATAAGATATAGATGGGACGACCCTCAAGTAATTCCTGCTAATATGACACTAGAGGTGTCAGAGCTTTTTACAAGGGAGTTGACAAGGTACATTGAAGAAACCGAAGAACTTGCAATGAATGCTTTGAAGAATAATAGGCACATCCTGGACTTGGTTGTGAGGGAACTATTGGAGAGGTCAAGAATAACTGGATTGGAGGTTGAAGAAAAATTGAAGGAAATGTCTCCAGTAATGTTTGAGGACTTTGTGAAGCCATTCCAGATAAATCCAGATGAGGAGGGACCATTACCACACAATGATCGTCTACGATATCAGTTACCCGACATATATCCGGCTCCTCTGCATAGATGTTGA 2943 0.4217 MELTIPHNPNPLLVSSSPPLSPNPNPNVFTLTAPRRRRNLRFRVSATAEPDGPSSLWLQSLRRGSRRFWVKFGEMVKKETGLGFENGTVKKFDNEFDELRRFGSQFIDWNRWERWKNIKDWEPKRIGALVLYIFAVVCACRGVYVTIQAPFLNCQKKELTEAYMESLIPEPSPTNIRRFKKGMWKKTMPKGLKMKKLIERPDGTLVHDTSYVGEDAWEDDREAPEERVKQIIEDDERLNKEEKKELTKGLGISGEVQAEGTWRERLYKWREILSKECFNEQVDSLNVKYVVEFDMKEVENSLRKDVAEKVTPTEGTRALWIAKRWWLYRPKLPYTYFLEKLDSSEVAAVVFTEDLKRLYVTMKEGFPLEFVVDIPLDPYMFENITSSGVEVDLLQKRQIHYFMKVVIALVPGILILWLIRESVMLLHITNKRFLYKKYNQLFDMAHAENFIMPVGDVSETKSMYKEVVLGGDVWDLLDELMIYMGNPMQFYERDVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGASRINEMFSIARRNAPCFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGEKEKTGVDRVSLRQAIIFICATNRPDELDLEFVRAGRIDRRLHIGLPDIKQRVQIFGVHSSGKQLAEDVNFEELVFRTVGFSGADIRNLVNEAAIMSVRKGHSTIFQKDIIDVLDKQLLEGMGVLLTEEEQQKCEQRVSFEKKRLLAVHEAGHVVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDMVDQGYTTFGYMMMQMVVAHGGRCAERIVFDDDITDGGSDDLEKITKIAREMVISSQNKKLGLIPLTKRVGLSDRPDSPDGELIRYRWDDPQVIPANMTLEVSELFTRELTRYIEETEELAMNALKNNRHILDLVVRELLERSRITGLEVEEKLKEMSPVMFEDFVKPFQINPDEEGPLPHNDRLRYQLPDIYPAPLHRC 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1245 980 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 12, CHLOROPLASTIC 35 980 - -
Aed4g1245 980 Pfam Peptidase family M41 730 931 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Aed4g1245 980 Gene3D Peptidase M41 723 939 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Aed4g1245 980 Gene3D - 456 639 IPR027417 -
Aed4g1245 980 MobiDBLite consensus disorder prediction 1 24 - -
Aed4g1245 980 PANTHER ATP-DEPENDENT PROTEASE 35 980 - -
Aed4g1245 980 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 463 708 IPR027417 -
Aed4g1245 980 CDD AAA 499 638 - -
Aed4g1245 980 Pfam AAA+ lid domain 660 702 IPR041569 -
Aed4g1245 980 Pfam ATPase family associated with various cellular activities (AAA) 501 637 IPR003959 GO:0005524|GO:0016887
Aed4g1245 980 SMART AAA_5 497 640 IPR003593 -
Aed4g1245 980 Gene3D - 640 713 - -
Aed4g1245 980 SUPERFAMILY FtsH protease domain-like 732 944 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1245 Aed-Chr4 12776462 12803692 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1245 464 865 Miscellaneous Gene Families AT5G53170 31.358 7.33e-54 200