Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1241 ATGTCGGTGCTGATAGTGACAAGCTTAGGTGACCTTGTCGTCGATTTGCACACCACCAAATGCCCCTTGACCTGCAAAAATTTCTTGAAGCTCTGCAAGATTAAGTACTACAATGGATGTCTATTTCACACTGTTCAAAAGGATTTTACTGCCCAAACTGGAGATCCAACTGGCACGGGAACTAGTGGCGATTCTGTTTACAAGTTTCTTTATGGTGATCAAGCTCGGTTTTTCAATGATGAAATTCATATTGATCTAAAGCATTCCAAGATTGGAACAGTTGCCATGGCAAGTGCTGGTGAGAATTTGAATGCTTCACAGTTCTATATCACTCTGCGTGATGACCTTGATTACCTTGACGGAAAGCACACAGTTTTTGGTGAGGTAGCTGAAGGATTTGAGACTTTAACTAGAATAAATGAGGCTTATGTGGATGAGAAAGGACGACCATATAAAAACTTAAGAATCAAGCACACATACATCCTGGAGGATCCTTATGATGATCCTTCTCAGCTATCTGAGTTTATTCCTGATGCTTCCCCAGAAGGAAAACCTAAAGATGAGGTTGATGATGAAGTGCGTCTTGAAGATGATTGGGTTCCCATGGATGAACAATTAAATCCAGCAGAACTTGAGGAGGTTATTAGATCAAAGGAAGCACATTCTAGGGCAGTTGTACTTGAGAGTATTGGGGATATTCCTGATGCTGAGATTAAGCCTCCAGACGATGTATTGTTTGTTTGTAAATTGAACCCAGTTACTGAGGATGAGGACTTGCATACAATATTTTCACGCTTTGGAACTGTATCATCGGCTGAAATCATCCGTGATCACAAGACTGGTGACAGTTTATGCTATGCTTTCATAGAGTTTGAGGACAAACAATCATGTGAGCAGGCATATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATACATGTGGATTTTAGTCAAAGTGTGGCAAAACTGTGA 978 0.4039 MSVLIVTSLGDLVVDLHTTKCPLTCKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTSGDSVYKFLYGDQARFFNDEIHIDLKHSKIGTVAMASAGENLNASQFYITLRDDLDYLDGKHTVFGEVAEGFETLTRINEAYVDEKGRPYKNLRIKHTYILEDPYDDPSQLSEFIPDASPEGKPKDEVDDEVRLEDDWVPMDEQLNPAELEEVIRSKEAHSRAVVLESIGDIPDAEIKPPDDVLFVCKLNPVTEDEDLHTIFSRFGTVSSAEIIRDHKTGDSLCYAFIEFEDKQSCEQAYFKMDNALIDDRRIHVDFSQSVAKL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1241 325 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 159 IPR002130 GO:0000413|GO:0003755
Aed4g1241 325 Gene3D - 1 173 IPR029000 -
Aed4g1241 325 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 325 IPR035542 -
Aed4g1241 325 SUPERFAMILY RNA-binding domain, RBD 229 321 IPR035979 GO:0003676
Aed4g1241 325 CDD cyclophilin_RRM 4 169 IPR035538 -
Aed4g1241 325 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Aed4g1241 325 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Aed4g1241 325 SUPERFAMILY Cyclophilin-like 1 177 IPR029000 -
Aed4g1241 325 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Aed4g1241 325 SMART rrm1_1 244 317 IPR000504 GO:0003723
Aed4g1241 325 Gene3D - 179 324 IPR012677 -
Aed4g1241 325 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Aed4g1241 325 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Aed4g1241 325 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Aed4g1241 325 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Aed4g1241 325 CDD RRM_PPIL4 240 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1241 Aed-Chr4 12674102 12687967 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1241 3 166 U-box Gene Family AT5G67530 39.634 1.63e-32 125