Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1237 ATGATGGAACAGTCGAGATTCTACAAACAGTTTCAATGCAATACCATGGAACCTAGGAATGAGGAGTTCCAGCCTGGATCTCAATCAGTAATTCAGGACCATATGGATGGCATGCATACTATCAGAAGACCATCTGACTATAACATGGCAGATGTTAAACCAGTACTTAATTATTCAATACAGACGGGTGAGGAATTTGCTCTAGAATTCATGCGAGATAGGGTGAATCTCAGGAAGCCTGTATTTTCAAATGTTATTGATTCCAACTCCAATTATGCAACTGGTTGCATGGAACTGCAAGGTGTTTTAGGCATCAGTCAGGCAGCATCTGAAAGTGGGTCAGACATTTCTATGATCTCAAAAGCTGAGAAAGTTCCAACAGAGTTTAACAGACAGAGTACATCATTACATGGAGACAGAAGCAACTATGGGTCAATTCGATCAATACCAAGAACTTCATTGAATCAGGAGAATAGTCGATTTGTACGTGGGTATGGCTCTTCTGTTGGTTCTGACAGCTCATCCATCATGATGAAGTGTCTTTGTAGCTTTGGTGGCAAAATATTACCACGCCCAAGTGATGGAAATCTAAGGTATGTTGGAGGTCAAACTCGTATTCTTCGTCTAAGAAAGAACATATCTTGGCAGGAGCTTATGCAGAAAGCATTGTTAGTCTATAATCTGGTTCATGTTTTAAAATATCAACTTCCTGGGGAAGATCTTGATGCTTTGGTATCAGTATCATCTGATGAAGATTTGCAGAATATGATGGAGGAATGTAATCTTCTAGAAGATAGAGAACGCTCACAAAAGCTTAGGTTGTTTTTGTTCTCAATGAGTGATTTAGAAGATGCTCAGTTTACTCTCAGTAGCATTGGTGATGATTCTGAGGTCCAATATGTTCTTGCTGTTAATGCTATGGACCTTGGATCGAGAAACAGCTCAACCCCACTTGGTGTCAATTTTTCAGCAGATGATCTACATGAATTGGAAAGGCAAACTACGGAGAGGGAGACTAGTAGAGTTGCTGTAGAATCTATAGGTGTCAGCAATGCTCCCTTGACTAATAAATCTGACTCTTCATGGACTATTCATTCTTCACAACCAGTTCTACCAAATGCCTCAAATGCTTATGAAATCAATCAACCGTCATATGGTGACCAAATGACGCAAGTTGGGGAATATAGTCGTCAATATTTTGTTCACCATGGCCTTAATTCCAGTCATAACCTAAACCCTATTGTTGGACAGACTCCTATTCCTATGTCTCCTCATCTGCTTAACAATCAACAAGGTGTTCTCAATGAAGATAATCTACCTAGTGGCTTACAAATACAAAATTCTCAGTTATCTACAATGCAGGTTAAAAAGATAAGCGATAGTTCAGTTAAACAAGGTAGTGACCCTGGTAAAGTTTTATCCCTGGAAACCCCATCCCCAGCTCCCTCACAGCCTTTTGATAGTTGCTTGAAAAATAATTTTCCTGAAGCATCGGTTGTAGTTACCATGCCTGAGGGGCATCTATCTTCATTGTCTTCAACAAAAAAGGTTCAGCACAAGGATTATGAAGAGGTCTCTTCTACTTCTAGCAGTGCATTTGTTCCTTCTTATGTTGATTCCCACACCAATGCAATTGATTTGAGTTGTCTTCATCCTCCTCCACTTCCTGAGAGAGTTTACTATTCAGAAAGAACTCCAAGGGAGCAAGTGGAGTTGCTGAATCGTTCATCCAAGTCAGATGACACAAACAGTTCTCAAATTCATGTTTCAGATTTACTTTCTGATGTCAACCCAGAGGATCCAGTGACAGTATCTGTTGACAACTTGCATGATGGTAAAATGTTAAATCCAACTGAGGAATTGGGTTTTGCAGCAAACACCTTGCTTGCAGATGGCCATACCATTGACAATGGGTTTTCCAAAAATCAAATGAGCAGACCGGTGCCTGATACAAACAGTCTAGTTAAGACAAAACTATCTGAGCACACAGATCCTGAGTTGAAGTTGGTGTTGCCAAGCAATGAAGGAACTAAAGATGTTGAAACTGAAAATAATCGTAAAGATAACCACACCAAGCCCTTGGTTGATGAAACCAAAACCAAAACCACAGATGGTAAAACAGATCTTCCTGCTTTGCATCATGTTTCCTCTGGTAAGCGTCTTGATGATCTAGCATCTAGTCTTCCAGAGATTGATTGGGGTGAAGCCTCAGGGAAGGAGTCTAATGATGGTTGTATGGTACAAGAACTACCTGTATCTGTAACTGGGAATATAGCCAAAGATGTTTATCAAGATTTCCCTCCAAATGTTGTTTCTGAACAATCTCAAGGTGACATTCTTATTGATATTGATGATCGATTTCCCCGGGAAATACTCTCTGATATGTTTTCTAAAGCAATACATGGAGAAGATCTCTCCAGTCTACATCCACTGTCTGGAGATGGAGTAGGCTTAAGCATAAATATGGAAAATCATGAACCTAAAAGATGGTCATATTTTCATAAGTTAGCACAAGAAGGGCTTGAGAATGTTTCTCTTATTGACCAAGATCATCTTGGTTTTTCACCCGTGATAGGAAAAGCAGGAGATAATAGAACCCATCATGTTATGCCACCAACAACTGATGGGCATCCTCTGCATCAGGAAGATTCCCATCTCAATTTCAATGATGAAAATCAAGAGGACTTACATAGAAGGCTTGGAACTGAAACCACTGTTCTGAAGTCCAATTATAATCAATCCCAACTTAAGGACAATGAGAGTATGCAGTTTGATGCCATGATGGAAAATCTAAGAACACACGAGTCAGAGTTTGAGGATGGCAAATTTGATGCAAAAAATAGCAATCTACCACCACTTGATCCTACTGTGCAGGTCATTAAGAATGAAGATCTTGAAGAGCTGCGAGAACTAGGTTCTGGTACCTTTGGGACTGTGTATCATGGAAAATGGAGAGGAACAGATGTTGCTATTAAAAGAATAAAGAAGAGCTGCTTTACTGGTCGATCATCTGAGCAAGAGAGACTGTTCTGGCGGGAAGCTGACATTCTTTCCAATCTTCATCATCCAAATGTGGTTGCATTTTATGGTGTAGTACAGCATGGACCAGGAGGAACAATGGCCACTGTGGCAGAATACATGGTGGATGGTTCTCTTAGGCATGTCTTACTTCGCAAGGACAGGTATCTTGATCGTCGCAAGAGGCTGATAATTGCAATGGATTCAGCTTTTGGAATGGAATATTTGCACTCAAAAAACATTGTGCATTTCGACTTAAAATGTGACAATTTGCTTGTAAACTTGAAAGATCCTTTACGCCCAATATGCAAGGTTGCTGATTTTGGCTTATCAAAAATTAAACGAAATACCTTGGTTACTGGTGGTGTGCGTGGGACTCTACCTTGGATGGCACCTGAGCTGCTGAATGGCAGCAGCAACAAGGTCTCTGAAAAGGTTGATGTGTTCTCCTTTGGCATAGTATTATGGGAAATTCTGACGGGTGAGGAGCCATATGCTAATATGCACTATGGTGCAATTATAGGTGGGATTGTTAATAACACATTAAGGCCAACCATCCCAAGTAACTGTGATCCTGAATGGAGAACACTAATGGAACAATGTTGGGCACCCAATCCTTCAGCCAGACCATCTTTCACAGAAATCGCAAGTCGTTTGCGCATAATGTCAGCAGCAGCAGCAGCTAGCCAAACCAAAACACAGGGCAATAAAGCATCTAAATGA 3741 0.4052 MMEQSRFYKQFQCNTMEPRNEEFQPGSQSVIQDHMDGMHTIRRPSDYNMADVKPVLNYSIQTGEEFALEFMRDRVNLRKPVFSNVIDSNSNYATGCMELQGVLGISQAASESGSDISMISKAEKVPTEFNRQSTSLHGDRSNYGSIRSIPRTSLNQENSRFVRGYGSSVGSDSSSIMMKCLCSFGGKILPRPSDGNLRYVGGQTRILRLRKNISWQELMQKALLVYNLVHVLKYQLPGEDLDALVSVSSDEDLQNMMEECNLLEDRERSQKLRLFLFSMSDLEDAQFTLSSIGDDSEVQYVLAVNAMDLGSRNSSTPLGVNFSADDLHELERQTTERETSRVAVESIGVSNAPLTNKSDSSWTIHSSQPVLPNASNAYEINQPSYGDQMTQVGEYSRQYFVHHGLNSSHNLNPIVGQTPIPMSPHLLNNQQGVLNEDNLPSGLQIQNSQLSTMQVKKISDSSVKQGSDPGKVLSLETPSPAPSQPFDSCLKNNFPEASVVVTMPEGHLSSLSSTKKVQHKDYEEVSSTSSSAFVPSYVDSHTNAIDLSCLHPPPLPERVYYSERTPREQVELLNRSSKSDDTNSSQIHVSDLLSDVNPEDPVTVSVDNLHDGKMLNPTEELGFAANTLLADGHTIDNGFSKNQMSRPVPDTNSLVKTKLSEHTDPELKLVLPSNEGTKDVETENNRKDNHTKPLVDETKTKTTDGKTDLPALHHVSSGKRLDDLASSLPEIDWGEASGKESNDGCMVQELPVSVTGNIAKDVYQDFPPNVVSEQSQGDILIDIDDRFPREILSDMFSKAIHGEDLSSLHPLSGDGVGLSINMENHEPKRWSYFHKLAQEGLENVSLIDQDHLGFSPVIGKAGDNRTHHVMPPTTDGHPLHQEDSHLNFNDENQEDLHRRLGTETTVLKSNYNQSQLKDNESMQFDAMMENLRTHESEFEDGKFDAKNSNLPPLDPTVQVIKNEDLEELRELGSGTFGTVYHGKWRGTDVAIKRIKKSCFTGRSSEQERLFWREADILSNLHHPNVVAFYGVVQHGPGGTMATVAEYMVDGSLRHVLLRKDRYLDRRKRLIIAMDSAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVADFGLSKIKRNTLVTGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPSNCDPEWRTLMEQCWAPNPSARPSFTEIASRLRIMSAAAAASQTKTQGNKASK 1246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1237 1246 CDD STKc_MAP3K-like 971 1225 - -
Aed4g1237 1246 MobiDBLite consensus disorder prediction 679 711 - -
Aed4g1237 1246 Gene3D - 198 279 - -
Aed4g1237 1246 PRINTS Tyrosine kinase catalytic domain signature 1196 1218 IPR001245 GO:0004672|GO:0006468
Aed4g1237 1246 PRINTS Tyrosine kinase catalytic domain signature 1081 1099 IPR001245 GO:0004672|GO:0006468
Aed4g1237 1246 PRINTS Tyrosine kinase catalytic domain signature 1152 1174 IPR001245 GO:0004672|GO:0006468
Aed4g1237 1246 PRINTS Tyrosine kinase catalytic domain signature 1044 1057 IPR001245 GO:0004672|GO:0006468
Aed4g1237 1246 MobiDBLite consensus disorder prediction 672 711 - -
Aed4g1237 1246 Pfam PB1 domain 194 277 IPR000270 GO:0005515
Aed4g1237 1246 Pfam Protein tyrosine and serine/threonine kinase 966 1225 IPR001245 GO:0004672|GO:0006468
Aed4g1237 1246 SUPERFAMILY CAD & PB1 domains 194 282 - -
Aed4g1237 1246 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1087 1099 IPR008271 GO:0004672|GO:0006468
Aed4g1237 1246 Gene3D Transferase(Phosphotransferase) domain 1 1050 1246 - -
Aed4g1237 1246 PANTHER - 97 1246 - -
Aed4g1237 1246 CDD PB1_UP2 181 277 - -
Aed4g1237 1246 Gene3D Phosphorylase Kinase; domain 1 958 1049 - -
Aed4g1237 1246 PANTHER SERINE-THREONINE PROTEIN KINASE 97 1246 - -
Aed4g1237 1246 ProSiteProfiles Protein kinase domain profile. 965 1227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g1237 1246 MobiDBLite consensus disorder prediction 457 488 - -
Aed4g1237 1246 SMART PB1_new 192 279 IPR000270 GO:0005515
Aed4g1237 1246 ProSitePatterns Protein kinases ATP-binding region signature. 971 996 IPR017441 GO:0005524
Aed4g1237 1246 SMART serkin_6 965 1228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g1237 1246 SUPERFAMILY Protein kinase-like (PK-like) 950 1225 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1237 Aed-Chr4 12619372 12636090 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1237 2 636 MAP Kinase Kinase Kinase AT1G16270 35.989 2.74e-83 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Aed4g1237 PK_Tyr_Ser-Thr 3.7e-63 CL0016