LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed4g1210	ATGCCAGGAAACAACAAGTACAACGGCAACTCCGGCCACATTCCGACGAGCCGTCTGGAGCGGCTGCTGAGGGACAGAGTGCTGAGGAAGAGCGGGAGGGCGAATGAGAACAATGGAGAGGCGTTGTTCGAGGAGGAGGCGGTGCGGCTGAGGGAAGAAGAGAGCGCGGCCGAGGCGGCGGCGGCAGCGACGACGAAGCTGGGGGCGGAGGAGAGGCAGGAAGCGAAGCCGTTTCGACAGAGGCTTCTGGTGGTGGCTAACAGGCTGCCGGTGTCGGCGGTGAGGAAGGGGGAGGACGCGTGGTCGTTGGAGATAAGTGCCGGTGGCCTCGTCAGCGCGTTGTTAGGTGTGAAGGAGTTTGAGGCAAGGTGGATAGGTTGGGCCGGTGTGAACGTGCCAGATGAGATTGGACAGAAGGCACTTACAAAAGCTTTGGCTGAAAAGAGGTGCATTCCTGTATTTCTTGATGAAGAGATCGTTCACCAATACTACAACGGCTACTGCAACAACATCCTGTGGCCACTCTTCCACTACCTCGGACTTCCGCAGGAAGACCGGCTCGCCACCACGCGCAGCTTCCAGTCGCAGTTCGAGGCGTACGAGAAAGCGAACCAGATGTTTGCTGATGTCGTGAATCAGCATTATGAGGAGGGTGATGTTGTTTGGTGCCATGACTACCATCTCATGTTCCTCCCCAAATGCCTGAAGAACCATAACAAGAAGATGAAAGTTGGGTGGTTCCTCCACACGCCTTTTCCGTCTTCGGAGATTCATCGGACGCTGCCGTCTCGTTTTCACACCTACGATTATGCAAGACATTTTGTTAGTGCTTGTACTCGCATCCTTGGACTTGAAGGTACACCTTATGGGGTTGAGTATCAAGGGAAGCTAACTCGAGTTGCTGCAGTAATGTTAGGTGTTGATCGCCTTGATATGATTAAAGGAATCCCTCAGAAAATTCTAGCATTTGAAAAATTTTTGGAAGAAAATGCGTATTGGCGTGATAAAGTTGTTTTGCTTCAAATTGCTGTCCCCACAAGAACAGATGTTCCTGAGTATCAAAAGCTTACAAGCCAGGTTCATGAAATAGTTGGTCGAATCAATGGCAGATTTGGAACATTGACTGCTGTTCCTATTCATCACTTGGATCGCTCACTTGACTTTCATGCACTATGTGCTTTGTACGCTGTTACAGATATAGCACTAGTCACATCTTTGAGGGATGGAATGAATCTTGTTAGCTATGAATTTGTGGCCTGCCAGGAGAAAAAGAAAGGGGTTCTCATTCTTAGTGAAGCACAACTAAGGACAAGACAAGTTCCACCAAGGCTTCCAACCAAGACTGCAATTGAACGTTATCAGCAGTCAACTAATCGATTGCTCATTTTGGGATTCAGTGGAACTATAACAGAACCAGTGGAGAAAACAGGTGATCAAATCAAAGAAATGGAACTTAAGGTGCATCCAAAATTGAGACAACCCTTGACAGCTCTATGCAGTGATCCAAATACCACAGGTGAGTGGATGACAACAATGCCAGAGCATCTGAATATGGAGTGGGTTGATAGTGTGAAGCATGTTTTTGAGTACTTTACGGAAAGAACACCTCGGTCACATTTTGTTTTTGAAGAAAGGGAAACTTCACTTGTGTGGAATTACAAGTATTCAGGTCCAATTTCTAATGCATCAGTTGAAGTTGTTCAAGGGAGCCGATCCGTTGAGGGAGCAGCCATTGACCGTATCTTGGGTGAGATAGTGCACAGTAAATCCATGACATCACCAATTGATTACGTTCTTTGCATAGGACATTTTCTGGGAAAGGATGAAGATCTTTATTCATTTTTTGAACCGGACCTTCCCTCAATTGGTGTGGGTCTTCCACGAAGCAAGGTAACAACAGATGGAGCTAAGTTTCCTGCTGCTGCTGATCAGAGGAAACAACCATCTTTGAAGAGTAGTGGACCAATAAAGTCAACATCATCTCCAAATAATAAGTCACACAGAACACTGTCATCAAACTCCGATCAGAAGAAAACAAGCAGCCAAATATTGAGCAGTGCAACCCGAAGACCGGTGGCACCCGAAAAGGAATCATGGAACGTCCTTGACCTCAAGAAGGAGAATTACTTCTCTTGTACAGTCGGAAGAACACGGACAAATGCTCGGTATATACTCGATTCGTCGGACGACGTTGTTTCATTTCTTAGGGAACTGGCCGGCCCTTCTTCCCAACTCGGTTGA	2241	0.4739	MPGNNKYNGNSGHIPTSRLERLLRDRVLRKSGRANENNGEALFEEEAVRLREEESAAEAAAAATTKLGAEERQEAKPFRQRLLVVANRLPVSAVRKGEDAWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEIGQKALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFEAYEKANQMFADVVNQHYEEGDVVWCHDYHLMFLPKCLKNHNKKMKVGWFLHTPFPSSEIHRTLPSRFHTYDYARHFVSACTRILGLEGTPYGVEYQGKLTRVAAVMLGVDRLDMIKGIPQKILAFEKFLEENAYWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDIALVTSLRDGMNLVSYEFVACQEKKKGVLILSEAQLRTRQVPPRLPTKTAIERYQQSTNRLLILGFSGTITEPVEKTGDQIKEMELKVHPKLRQPLTALCSDPNTTGEWMTTMPEHLNMEWVDSVKHVFEYFTERTPRSHFVFEERETSLVWNYKYSGPISNASVEVVQGSRSVEGAAIDRILGEIVHSKSMTSPIDYVLCIGHFLGKDEDLYSFFEPDLPSIGVGLPRSKVTTDGAKFPAAADQRKQPSLKSSGPIKSTSSPNNKSHRTLSSNSDQKKTSSQILSSATRRPVAPEKESWNVLDLKKENYFSCTVGRTRTNARYILDSSDDVVSFLRELAGPSSQLG	746

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed4g1210	746	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	33	302	IPR001830	GO:0003824\|GO:0005992
	Aed4g1210	746	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	505	738	-	-
	Aed4g1210	746	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	303	432	-	-
	Aed4g1210	746	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	33	302	-	-
	Aed4g1210	746	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	303	432	IPR001830	GO:0003824\|GO:0005992
	Aed4g1210	746	Pfam	Trehalose-phosphatase	505	555	IPR003337	GO:0003824\|GO:0005992
	Aed4g1210	746	MobiDBLite	consensus disorder prediction	646	688	-	-
	Aed4g1210	746	Pfam	Glycosyltransferase family 20	81	302	IPR001830	GO:0003824\|GO:0005992
	Aed4g1210	746	Pfam	Glycosyltransferase family 20	303	432	IPR001830	GO:0003824\|GO:0005992
	Aed4g1210	746	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	432	505	IPR001830	GO:0003824\|GO:0005992
	Aed4g1210	746	Gene3D	Glycogen Phosphorylase B;	69	303	-	-
	Aed4g1210	746	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	432	505	-	-
	Aed4g1210	746	MobiDBLite	consensus disorder prediction	638	691	-	-
	Aed4g1210	746	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	505	738	IPR001830	GO:0003824\|GO:0005992
	Aed4g1210	746	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	80	433	-	-
	Aed4g1210	746	CDD	GT20_TPS	81	432	IPR001830	GO:0003824\|GO:0005992
	Aed4g1210	746	Gene3D	Glycogen Phosphorylase B;	304	432	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed4g1210	Aed-Chr4	12038397	12055809	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed4g1210	432	743	Trehalose Biosynthesis Gene Families	AT1G78580	54.145	1.87e-113	363

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed4g1210	K16055		-	gmx:100797320	759.599

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed1g0466	1	6393499	6413453	Aed4g1210	4	12038397	12055809	ECH
	Aed4g1210	4	12038397	12055809	Aed4g1210	4	12038397	12055809	ECH