Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed4g1207 | ATGAGAAGAAGAGTCCCTCTGTCACTGAAACGAGCATTCCACCACAATGCACAACCCCACCTCCCTCCCCGCGAAGTGGTGTATCCCTTCTCCGACCTCTCCGACGTCGTCGTTTCGTCCCCCAAACCCTCCCCATGGGTCCCGCAGATCCTCTCCCTCCTCGACGGTTCCCCCTCAATGGAGTCCAACCTCGACTCCTTCTGCCAAAAGTTCCTCATTACCCTCTCCCCCTCCTTCGTCTCCCACACCCTCCGCTCCCTCCCCCAAAAAAATCCAAAACCCCTCGTCGCCCCACGCTTCTTCTCCTGGGCCGCGACGCAGCGTAACTACTCCCACTCCCTCGACTGCCACGTGTCCCTCCTCCCTTTCCTCCTCGATAATCCCTCCCTCCTCCGCGAATCCCTCTCCGCCCTCCGCCAATCCAACCTCCCCCTCACCCTCCCCGCCGCCCACTCCCTCGCCTCCACCCTCGCCTCCGCCGCCCTCGTCGACGACCTCCTCTGGCTCCTCCGAGAATTAAAAAACAACAACCTCCCCGCCACCCTCCCCATCCACAACTCCCTCCTCAACGCCCTCGTCAACGCCTCCCTCGTAAACTCCGCCGAACGCGTCTTCGCCTCCCTCCGCGAATCATCCCAAAAGCCCGACGCCGTCAGCTACAACACGCTCATCAAGGGCTACTGCGGAGCGGGGCGTACGCGCGACGCGCTCGCCGCGCTCCGCGAAATGGAGGCGGACAACCTCCCACCCGACGAAATCACCTACATGACACTCATCCAGGCGTGCTACAGCGAGGGTGACGTGGACTCCTGCTTGAGGCTCTACCACGAGATGGAGGAGGATAATCTTCTACAAATGAAAATCCCTTTACACGCTTATAGTTTGGTGATTTGCGCGTTGTGCAAGCAACTGAAGGTTGCGGAAGGTTGTGCCGTGTTTGAGAGCATGGTTAGGAGAGGCTGTAGGCCTCATAAGGCTGTGTACACTGCCATAATTGACGGTTATGCGAAGAGCGGGGACTTGGATTCGGCGATGGCGTTTTTCGATAGGATGAAGGCGGATGGCGTTGAGATTGATGAGGTTACCTACGGGGCTGTTGTGAGTGGGTTGTGTAAGGGTGGGAGAGTGGATGAGGCTTTGGGTTGTTTTAGGTTTTGTAAGGGGGATGGTGTGGCAGTGAATGCAGTGTTTTATTCGAGTTTGATTGACGGGCTTGGGAAGGTTGGGAGGGTGGATGAGGCAGAGAGGCTGTTTGAGGAGATGGAGGGGGAGGGGTGTCCGCGAGATTCATATTGTTACAATGCTCTCATGGACGGTTTGTGCAAGGGCGGGAGGGTTGATGAGGCGCTGGCGTTGTTTGGGCGGATGGAGCAGGAGGGGTGTGGGCCGACGGTTTATACGTTTACTATACTTATTAGCGAGCTTTTCAAGGAGAGGAGGAATGAGGAGGCGCTGAAGCTGTGGGACGAGATGATTGACAAAGGGGTCGCGCCGAATGTGGCGTGTTTTAGGGCTCTTTCAATTGGGCTGTGTCTTTCGGGGAAGGTTGTGAGGGCTTGCAGGGTGTTGGACGAGCTGGCGCCCATGGGGATTGTTCTGGATACGGCGTATGATGACATGATTGGTGTGCTGTGCAGGGCTGGTCGCGTGAAGGAGGCCTGCAAGTTGGCGGATGGAATTGTGGATAGGGGTAGGGAAATACCGGGGAAGGTTCGGACTGTGTTGATTAATGCTTTGAGGAAAGCTGGTAATGCAGATTTGGCGATAAAGTTGATGCATAGCAAGATTGGTATTGGGTATGACCGAACGCGTAGTGTTAAGAAGCGAGTGAAGTTCCAAACCCTTGTTTGA | 1851 | 0.5635 | MRRRVPLSLKRAFHHNAQPHLPPREVVYPFSDLSDVVVSSPKPSPWVPQILSLLDGSPSMESNLDSFCQKFLITLSPSFVSHTLRSLPQKNPKPLVAPRFFSWAATQRNYSHSLDCHVSLLPFLLDNPSLLRESLSALRQSNLPLTLPAAHSLASTLASAALVDDLLWLLRELKNNNLPATLPIHNSLLNALVNASLVNSAERVFASLRESSQKPDAVSYNTLIKGYCGAGRTRDALAALREMEADNLPPDEITYMTLIQACYSEGDVDSCLRLYHEMEEDNLLQMKIPLHAYSLVICALCKQLKVAEGCAVFESMVRRGCRPHKAVYTAIIDGYAKSGDLDSAMAFFDRMKADGVEIDEVTYGAVVSGLCKGGRVDEALGCFRFCKGDGVAVNAVFYSSLIDGLGKVGRVDEAERLFEEMEGEGCPRDSYCYNALMDGLCKGGRVDEALALFGRMEQEGCGPTVYTFTILISELFKERRNEEALKLWDEMIDKGVAPNVACFRALSIGLCLSGKVVRACRVLDELAPMGIVLDTAYDDMIGVLCRAGRVKEACKLADGIVDRGREIPGKVRTVLINALRKAGNADLAIKLMHSKIGIGYDRTRSVKKRVKFQTLV | 616 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed4g1207 | 616 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 429 | 463 | IPR002885 | - | |
| Aed4g1207 | 616 | TIGRFAM | PPR: pentatricopeptide repeat domain | 398 | 429 | IPR002885 | - | |
| Aed4g1207 | 616 | TIGRFAM | PPR: pentatricopeptide repeat domain | 218 | 252 | IPR002885 | - | |
| Aed4g1207 | 616 | TIGRFAM | PPR: pentatricopeptide repeat domain | 253 | 282 | IPR002885 | - | |
| Aed4g1207 | 616 | TIGRFAM | PPR: pentatricopeptide repeat domain | 466 | 500 | IPR002885 | - | |
| Aed4g1207 | 616 | TIGRFAM | PPR: pentatricopeptide repeat domain | 431 | 464 | IPR002885 | - | |
| Aed4g1207 | 616 | TIGRFAM | PPR: pentatricopeptide repeat domain | 292 | 323 | IPR002885 | - | |
| Aed4g1207 | 616 | TIGRFAM | PPR: pentatricopeptide repeat domain | 361 | 384 | IPR002885 | - | |
| Aed4g1207 | 616 | TIGRFAM | PPR: pentatricopeptide repeat domain | 327 | 360 | IPR002885 | - | |
| Aed4g1207 | 616 | Pfam | PPR repeat family | 326 | 372 | IPR002885 | - | |
| Aed4g1207 | 616 | Pfam | PPR repeat family | 215 | 262 | IPR002885 | - | |
| Aed4g1207 | 616 | Pfam | PPR repeat family | 429 | 476 | IPR002885 | - | |
| Aed4g1207 | 616 | Gene3D | Tetratricopeptide repeat domain | 457 | 532 | IPR011990 | GO:0005515 | |
| Aed4g1207 | 616 | Gene3D | Tetratricopeptide repeat domain | 533 | 595 | IPR011990 | GO:0005515 | |
| Aed4g1207 | 616 | Gene3D | Tetratricopeptide repeat domain | 385 | 456 | IPR011990 | GO:0005515 | |
| Aed4g1207 | 616 | Gene3D | Tetratricopeptide repeat domain | 286 | 384 | IPR011990 | GO:0005515 | |
| Aed4g1207 | 616 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 394 | 428 | IPR002885 | - | |
| Aed4g1207 | 616 | Pfam | PPR repeat | 390 | 422 | IPR002885 | - | |
| Aed4g1207 | 616 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 464 | 498 | IPR002885 | - | |
| Aed4g1207 | 616 | Pfam | PPR repeat | 537 | 561 | IPR002885 | - | |
| Aed4g1207 | 616 | Pfam | PPR repeat | 292 | 321 | IPR002885 | - | |
| Aed4g1207 | 616 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 251 | 285 | IPR002885 | - | |
| Aed4g1207 | 616 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 324 | 358 | IPR002885 | - | |
| Aed4g1207 | 616 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL | 17 | 616 | - | - | |
| Aed4g1207 | 616 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 359 | 393 | IPR002885 | - | |
| Aed4g1207 | 616 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL | 17 | 616 | - | - | |
| Aed4g1207 | 616 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 289 | 323 | IPR002885 | - | |
| Aed4g1207 | 616 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 216 | 250 | IPR002885 | - | |
| Aed4g1207 | 616 | Gene3D | Tetratricopeptide repeat domain | 127 | 285 | IPR011990 | GO:0005515 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed4g1207 | 292 | 603 | Glycosyltransferase | AT1G05670 | 29.073 | 6.48e-38 | 148 |